1 Response_reg#1
6-110 aa · 105 aa · 45.3% of protein
Raw token
Response_reg:6:0.00000000000000463:110:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9436_RS08095
Response regulator LytTR family
Faecalibacterium cf. prausnitzii KLE1255 · GCF_000166035
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000166035#HMPREF9436_RS08095Stable P2CS identifier used across views.
GenomeGCF_000166035Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 232 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-227 aa · 88 aa · 37.9% of protein
Raw token
LytTR:140:1.45e-22:227:93:98- Raw architecture: Response_reg:6:0.00000000000000463:110:109:111#LytTR:140:1.45e-22:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000166035::NZ_GL538336.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span80692-81390Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9436_01931RefSeq proteinWP_005943379.1
Context group ID
GCF_000166035::NZ_GL538336.1::G00019Context members
HMPREF9436_RS08095
Partner locus tags
HMPREF9436_RS08095
Partner old locus tags
HMPREF9436_01931
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005943379.1Primary protein accession used for annex mappings.
UniProt accessionE2ZJT2Primary UniProt accession resolved in the annex database.
UniProt IDE2ZJT2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9436_RS08095Primary locus identifier stored in the genes table.
Old locus tagHMPREF9436_01931Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL538336.1Sequence record reported by the local genomic context database.
Genomic interval80 692-81 390 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 692-81 390 ntGCF_000166035::NZ_GL538336.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166035::NZ_GL538336.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL538336.1All displayed genes belong to this local TCS context.
Neighborhood span80 692-81 390 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 692 nt81 390 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9436_RS08095GCF_000166035#HMPREF9436_RS08095
RRLytTRCurrent focus
80 692-81 390 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS08095The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119853
Simplified PFAM architecture for RROC_1119853
PFAM domain coverage: 198 / 232 aa (85.3%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-114] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1119853
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS08095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 748 224 · GCF_000166035
AssemblyASM16603v1 · Scaffoldhaploid
Genome composition2 928 734 bp · 56,5% GCFaecalibacterium cf. prausnitzii KLE1255
Signal transduction countsGenes 48 · HK 21 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key