1 Response_reg#1
4-114 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:4:1.01e-42:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9436_RS00990
Response regulator OmpR family
Faecalibacterium cf. prausnitzii KLE1255 · GCF_000166035
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166035#HMPREF9436_RS00990Stable P2CS identifier used across views.
GenomeGCF_000166035Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:149:1.39e-32:222:77:77- Raw architecture: Response_reg:4:1.01e-42:114:111:111#Trans_reg_C:149:1.39e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166035::NZ_GL538236.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30035-32266Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9436_00243RefSeq proteinWP_044953253.1
Context group ID
GCF_000166035::NZ_GL538236.1::G00002Context members
HMPREF9436_RS00990HMPREF9436_RS00995
Partner locus tags
HMPREF9436_RS00990HMPREF9436_RS00995
Partner old locus tags
HMPREF9436_00243HMPREF9436_00244
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044953253.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BR38Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BR38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9436_RS00990Primary locus identifier stored in the genes table.
Old locus tagHMPREF9436_00243Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL538236.1Sequence record reported by the local genomic context database.
Genomic interval30 035-30 721 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 035-32 266 ntGCF_000166035::NZ_GL538236.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166035::NZ_GL538236.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL538236.1All displayed genes belong to this local TCS context.
Neighborhood span30 035-32 266 nt2 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 035 nt32 266 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9436_RS00990GCF_000166035#HMPREF9436_RS00990
RROmpRCurrent focus
30 035-30 721 nt · Forward (+)
HMPREF9436_RS00995GCF_000166035#HMPREF9436_RS00995
HKClassic
30 740-32 266 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS00990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302290
Simplified PFAM architecture for RROC_1302290
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1302290
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS00990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 748 224 · GCF_000166035
AssemblyASM16603v1 · Scaffoldhaploid
Genome composition2 928 734 bp · 56,5% GCFaecalibacterium cf. prausnitzii KLE1255
Signal transduction countsGenes 48 · HK 21 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key