1 HAMP#1
194-262 aa · 69 aa · 13.6% of protein
Raw token
HAMP:194:0.000000025:262:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9436_RS00400
Histidine kinase, Classic
Faecalibacterium cf. prausnitzii KLE1255 · GCF_000166035
ClassHKTypeClassicLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166035#HMPREF9436_RS00400Stable P2CS identifier used across views.
GenomeGCF_000166035Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 507 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 His_kinase#2
294-373 aa · 80 aa · 15.8% of protein
Raw token
His_kinase:294:1.15e-27:373:80:803 HATPase_c#3
394-498 aa · 105 aa · 20.7% of protein
Raw token
HATPase_c:394:0.0000000000000202:498:108:109- Raw architecture: HAMP:194:0.000000025:262:69:69#His_kinase:294:1.15e-27:373:80:80#HATPase_c:394:0.0000000000000202:498:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166035::NZ_GL538226.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6516-8845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9436_00101RefSeq proteinWP_242821905.1
Context group ID
GCF_000166035::NZ_GL538226.1::G00001Context members
HMPREF9436_RS00400HMPREF9436_RS00405
Partner locus tags
HMPREF9436_RS00400HMPREF9436_RS00405
Partner old locus tags
HMPREF9436_00101HMPREF9436_00102
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242821905.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9436_RS00400Primary locus identifier stored in the genes table.
Old locus tagHMPREF9436_00101Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL538226.1Sequence record reported by the local genomic context database.
Genomic interval6 516-8 039 nt1 524 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 516-8 845 ntGCF_000166035::NZ_GL538226.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166035::NZ_GL538226.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL538226.1All displayed genes belong to this local TCS context.
Neighborhood span6 516-8 845 nt2 330 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 516 nt8 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9436_RS00400GCF_000166035#HMPREF9436_RS00400
HKClassicCurrent focus
6 516-8 039 nt · Forward (+)
HMPREF9436_RS00405GCF_000166035#HMPREF9436_RS00405
RRunclassified
8 036-8 845 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS00400The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1440472
Simplified PFAM architecture for HKOC_1440472
PFAM domain coverage: 233 / 507 aa (46.0%)
1 aa507 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[210-259] | His_kinase[295-372] | HATPase_c[394-498]
- Domain count: 3
- Matched identifier: HKOC_1440472
- Positioned domains: HAMP 210-259 ; His_kinase 295-372 ; HATPase_c 394-498
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS00400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 748 224 · GCF_000166035
AssemblyASM16603v1 · Scaffoldhaploid
Genome composition2 928 734 bp · 56,5% GCFaecalibacterium cf. prausnitzii KLE1255
Signal transduction countsGenes 48 · HK 21 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key