1 HAMP#1
179-248 aa · 70 aa · 13.8% of protein
Raw token
HAMP:179:0.0000000000000427:248:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9436_RS01875
Histidine kinase, Classic
Faecalibacterium cf. prausnitzii KLE1255 · GCF_000166035
ClassHKTypeClassicLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166035#HMPREF9436_RS01875Stable P2CS identifier used across views.
GenomeGCF_000166035Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 506 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-319 aa · 67 aa · 13.2% of protein
Raw token
HisKA:253:7.13e-19:319:67:643 HATPase_c#3
365-474 aa · 110 aa · 21.7% of protein
Raw token
HATPase_c:365:4.21e-30:474:110:109- Raw architecture: HAMP:179:0.0000000000000427:248:70:69#HisKA:253:7.13e-19:319:67:64#HATPase_c:365:4.21e-30:474:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166035::NZ_GL538239.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14833-17051Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9436_00449RefSeq proteinWP_005938288.1
Context group ID
GCF_000166035::NZ_GL538239.1::G00004Context members
HMPREF9436_RS01870HMPREF9436_RS01875
Partner locus tags
HMPREF9436_RS01870HMPREF9436_RS01875
Partner old locus tags
HMPREF9436_00448HMPREF9436_00449
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005938288.1Primary protein accession used for annex mappings.
UniProt accessionE2ZFL6Primary UniProt accession resolved in the annex database.
UniProt IDE2ZFL6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9436_RS01875Primary locus identifier stored in the genes table.
Old locus tagHMPREF9436_00449Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL538239.1Sequence record reported by the local genomic context database.
Genomic interval15 531-17 051 nt1 521 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 833-17 051 ntGCF_000166035::NZ_GL538239.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166035::NZ_GL538239.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL538239.1All displayed genes belong to this local TCS context.
Neighborhood span14 833-17 051 nt2 219 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 833 nt17 051 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9436_RS01870GCF_000166035#HMPREF9436_RS01870
RROmpR
14 833-15 531 nt · Forward (+)
HMPREF9436_RS01875GCF_000166035#HMPREF9436_RS01875
HKClassicCurrent focus
15 531-17 051 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS01875The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1444075
Simplified PFAM architecture for HKOC_1444075
PFAM domain coverage: 229 / 506 aa (45.3%)
1 aa506 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-248] | HisKA[253-319] | HATPase_c[366-475]
- Domain count: 3
- Matched identifier: HKOC_1444075
- Positioned domains: HAMP 197-248 ; HisKA 253-319 ; HATPase_c 366-475
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS01875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 748 224 · GCF_000166035
AssemblyASM16603v1 · Scaffoldhaploid
Genome composition2 928 734 bp · 56,5% GCFaecalibacterium cf. prausnitzii KLE1255
Signal transduction countsGenes 48 · HK 21 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key