1 Response_reg#1
6-118 aa · 113 aa · 43.0% of protein
Raw token
Response_reg:6:6.84e-27:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9436_RS03010
Response regulator, unclassified
Faecalibacterium cf. prausnitzii KLE1255 · GCF_000166035
ClassRRTypeunclassifiedLength263 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166035#HMPREF9436_RS03010Stable P2CS identifier used across views.
GenomeGCF_000166035Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 263 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
163-204 aa · 42 aa · 16.0% of protein
Raw token
HTH_AraC:163:0.00000103:204:42:423 HTH_AraC#3
219-253 aa · 35 aa · 13.3% of protein
Raw token
HTH_AraC:219:0.0000000000906:253:35:42- Raw architecture: Response_reg:6:6.84e-27:118:113:111#HTH_AraC:163:0.00000103:204:42:42#HTH_AraC:219:0.0000000000906:253:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166035::NZ_GL538273.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5497-7772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9436_00723RefSeq proteinWP_005939316.1
Context group ID
GCF_000166035::NZ_GL538273.1::G00005Context members
HMPREF9436_RS03010HMPREF9436_RS03015
Partner locus tags
HMPREF9436_RS03010HMPREF9436_RS03015
Partner old locus tags
HMPREF9436_00723HMPREF9436_00724
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005939316.1Primary protein accession used for annex mappings.
UniProt accessionE2ZGD8Primary UniProt accession resolved in the annex database.
UniProt IDE2ZGD8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9436_RS03010Primary locus identifier stored in the genes table.
Old locus tagHMPREF9436_00723Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL538273.1Sequence record reported by the local genomic context database.
Genomic interval5 497-6 288 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 497-7 772 ntGCF_000166035::NZ_GL538273.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166035::NZ_GL538273.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL538273.1All displayed genes belong to this local TCS context.
Neighborhood span5 497-7 772 nt2 276 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 497 nt7 772 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9436_RS03010GCF_000166035#HMPREF9436_RS03010
RRunclassifiedCurrent focus
5 497-6 288 nt · Reverse (-)
HMPREF9436_RS03015GCF_000166035#HMPREF9436_RS03015
HKClassic
6 285-7 772 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS03010The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0639446
Simplified PFAM architecture for RROC_0639446
PFAM domain coverage: 189 / 263 aa (71.9%)
1 aa263 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-117] | HTH_18[177-253]
- Domain count: 2
- Matched identifier: RROC_0639446
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HTH_18 177-253 ; HTH_18 177-253
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS03010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 748 224 · GCF_000166035
AssemblyASM16603v1 · Scaffoldhaploid
Genome composition2 928 734 bp · 56,5% GCFaecalibacterium cf. prausnitzii KLE1255
Signal transduction countsGenes 48 · HK 21 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key