1 Response_reg#1
4-115 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:4:4.18e-33:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9436_RS01385
Response regulator OmpR family
Faecalibacterium cf. prausnitzii KLE1255 · GCF_000166035
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166035#HMPREF9436_RS01385Stable P2CS identifier used across views.
GenomeGCF_000166035Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 235 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:157:1.2e-29:233:77:77- Raw architecture: Response_reg:4:4.18e-33:115:112:111#Trans_reg_C:157:1.2e-29:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166035::NZ_GL538237.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72104-74232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9436_00335RefSeq proteinWP_005937958.1
Context group ID
GCF_000166035::NZ_GL538237.1::G00003Context members
HMPREF9436_RS01380HMPREF9436_RS01385
Partner locus tags
HMPREF9436_RS01380HMPREF9436_RS01385
Partner old locus tags
HMPREF9436_00334HMPREF9436_00335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005937958.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BLH9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BLH9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9436_RS01385Primary locus identifier stored in the genes table.
Old locus tagHMPREF9436_00335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL538237.1Sequence record reported by the local genomic context database.
Genomic interval73 525-74 232 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 104-74 232 ntGCF_000166035::NZ_GL538237.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166035::NZ_GL538237.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL538237.1All displayed genes belong to this local TCS context.
Neighborhood span72 104-74 232 nt2 129 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 104 nt74 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9436_RS01380GCF_000166035#HMPREF9436_RS01380
HKClassic
72 104-73 528 nt · Reverse (-)
HMPREF9436_RS01385GCF_000166035#HMPREF9436_RS01385
RROmpRCurrent focus
73 525-74 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS01385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016848
Simplified PFAM architecture for RROC_1016848
PFAM domain coverage: 188 / 235 aa (80.0%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_1016848
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 157-232 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS01385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 748 224 · GCF_000166035
AssemblyASM16603v1 · Scaffoldhaploid
Genome composition2 928 734 bp · 56,5% GCFaecalibacterium cf. prausnitzii KLE1255
Signal transduction countsGenes 48 · HK 21 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key