1 HAMP#1
189-258 aa · 70 aa · 14.1% of protein
Raw token
HAMP:189:0.00000000000000131:258:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9436_RS03015
Histidine kinase, Classic
Faecalibacterium cf. prausnitzii KLE1255 · GCF_000166035
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166035#HMPREF9436_RS03015Stable P2CS identifier used across views.
GenomeGCF_000166035Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 495 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 His_kinase#2
283-362 aa · 80 aa · 16.2% of protein
Raw token
His_kinase:283:5.01e-34:362:80:803 HATPase_c#3
382-485 aa · 104 aa · 21.0% of protein
Raw token
HATPase_c:382:7.96e-16:485:106:109- Raw architecture: HAMP:189:0.00000000000000131:258:70:69#His_kinase:283:5.01e-34:362:80:80#HATPase_c:382:7.96e-16:485:106:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166035::NZ_GL538273.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5497-7772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9436_00724RefSeq proteinWP_044953378.1
Context group ID
GCF_000166035::NZ_GL538273.1::G00005Context members
HMPREF9436_RS03010HMPREF9436_RS03015
Partner locus tags
HMPREF9436_RS03010HMPREF9436_RS03015
Partner old locus tags
HMPREF9436_00723HMPREF9436_00724
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044953378.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9436_RS03015Primary locus identifier stored in the genes table.
Old locus tagHMPREF9436_00724Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL538273.1Sequence record reported by the local genomic context database.
Genomic interval6 285-7 772 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 497-7 772 ntGCF_000166035::NZ_GL538273.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166035::NZ_GL538273.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL538273.1All displayed genes belong to this local TCS context.
Neighborhood span5 497-7 772 nt2 276 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 497 nt7 772 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9436_RS03010GCF_000166035#HMPREF9436_RS03010
RRunclassified
5 497-6 288 nt · Reverse (-)
HMPREF9436_RS03015GCF_000166035#HMPREF9436_RS03015
HKClassicCurrent focus
6 285-7 772 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS03015The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504305
Simplified PFAM architecture for HKOC_1504305
PFAM domain coverage: 232 / 495 aa (46.9%)
1 aa495 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[205-255] | His_kinase[284-361] | HATPase_c[382-484]
- Domain count: 3
- Matched identifier: HKOC_1504305
- Positioned domains: HAMP 205-255 ; His_kinase 284-361 ; HATPase_c 382-484
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS03015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 748 224 · GCF_000166035
AssemblyASM16603v1 · Scaffoldhaploid
Genome composition2 928 734 bp · 56,5% GCFaecalibacterium cf. prausnitzii KLE1255
Signal transduction countsGenes 48 · HK 21 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key