1 dCache_1#1
167-283 aa · 117 aa · 14.0% of protein
Raw token
dCache_1:167:0.0000000468:283:118:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS12650
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength836 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460395#NE604_RS12650Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length836 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage420 / 836 aa (50.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa836 aa
Domain-by-domain annotation4 items
2 HisKA#2
456-522 aa · 67 aa · 8.0% of protein
Raw token
HisKA:456:0.0000000000000263:522:67:643 HATPase_c#3
569-686 aa · 118 aa · 14.1% of protein
Raw token
HATPase_c:569:2.28e-31:686:119:1094 Response_reg#4
713-830 aa · 118 aa · 14.1% of protein
Raw token
Response_reg:713:3.05e-28:830:118:111- Raw architecture: dCache_1:167:0.0000000468:283:118:195#HisKA:456:0.0000000000000263:522:67:64#HATPase_c:569:2.28e-31:686:119:109#Response_reg:713:3.05e-28:830:118:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460395::NZ_JANFYI010000230.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span425559-428069Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_11700RefSeq proteinWP_256146859.1
Context group ID
GCF_024460395::NZ_JANFYI010000230.1::G00015Context members
NE604_RS12650
Partner locus tags
NE604_RS12650
Partner old locus tags
NE604_11700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146859.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS12650Primary locus identifier stored in the genes table.
Old locus tagNE604_11700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000230.1Sequence record reported by the local genomic context database.
Genomic interval425 559-428 069 nt2 511 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span425 559-428 069 ntGCF_024460395::NZ_JANFYI010000230.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000230.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000230.1All displayed genes belong to this local TCS context.
Neighborhood span425 559-428 069 nt2 511 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
425 559 nt428 069 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE604_RS12650GCF_024460395#NE604_RS12650
HKHybridCurrent focus
425 559-428 069 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS12650The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0512898
Simplified PFAM architecture for HKOC_0512898
PFAM domain coverage: 543 / 836 aa (65.0%)
1 aa836 aa
dCache_1HisKAHATPase_cResponse_reg
- Simplified architecture: dCache_1 + HisKA + HATPase_c + Response_reg
- Raw architecture: dCache_1[42-283] | HisKA[456-522] | HATPase_c[569-685] | Response_reg[713-829]
- Domain count: 4
- Matched identifier: HKOC_0512898
- Positioned domains: dCache_1 42-283 ; HisKA 456-522 ; HATPase_c 569-685 ; Response_reg 713-829
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS12650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key