1 HAMP#1
179-246 aa · 68 aa · 14.4% of protein
Raw token
HAMP:179:0.000000000188:246:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS00180
Histidine kinase, Classic
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS00180Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 473 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-316 aa · 64 aa · 13.5% of protein
Raw token
HisKA:253:6.51e-21:316:64:643 HATPase_c#3
358-467 aa · 110 aa · 23.3% of protein
Raw token
HATPase_c:358:2.79e-25:467:110:109- Raw architecture: HAMP:179:0.000000000188:246:68:69#HisKA:253:6.51e-21:316:64:64#HATPase_c:358:2.79e-25:467:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34164-36249Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_00180RefSeq proteinWP_007048854.1
Context group ID
GCF_024460395::NZ_JANFYI010000001.1::G00001Context members
NE604_RS00175NE604_RS00180
Partner locus tags
NE604_RS00175NE604_RS00180
Partner old locus tags
NE604_00175NE604_00180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007048854.1Primary protein accession used for annex mappings.
UniProt accessionB1C6Q3Primary UniProt accession resolved in the annex database.
UniProt IDB1C6Q3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS00180Primary locus identifier stored in the genes table.
Old locus tagNE604_00180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000001.1Sequence record reported by the local genomic context database.
Genomic interval34 828-36 249 nt1 422 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 164-36 249 ntGCF_024460395::NZ_JANFYI010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span34 164-36 249 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 164 nt36 249 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS00175GCF_024460395#NE604_RS00175
RROmpR
34 164-34 844 nt · Forward (+)
NE604_RS00180GCF_024460395#NE604_RS00180
HKClassicCurrent focus
34 828-36 249 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS00325Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1686918
Simplified PFAM architecture for HKOC_1686918
PFAM domain coverage: 173 / 473 aa (36.6%)
1 aa473 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[253-316] | HATPase_c[359-467]
- Domain count: 2
- Matched identifier: HKOC_1686918
- Positioned domains: HisKA 253-316 ; HATPase_c 359-467
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS00325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key