1 PAS_3#1
305-363 aa · 59 aa · 6.4% of protein
Raw token
PAS_3:305:0.000000000441:363:59:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS02740
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength928 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS02740Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length928 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage480 / 928 aa (51.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa928 aa
Domain-by-domain annotation5 items
2 HisKA#2
418-484 aa · 67 aa · 7.2% of protein
Raw token
HisKA:418:3.83e-18:484:67:643 HATPase_c#3
531-649 aa · 119 aa · 12.8% of protein
Raw token
HATPase_c:531:6.23e-30:649:119:1094 Response_reg#4
665-781 aa · 117 aa · 12.6% of protein
Raw token
Response_reg:665:2.7e-23:781:117:1115 Response_reg#5
807-924 aa · 118 aa · 12.7% of protein
Raw token
Response_reg:807:1.09e-27:924:118:111- Raw architecture: PAS_3:305:0.000000000441:363:59:89#HisKA:418:3.83e-18:484:67:64#HATPase_c:531:6.23e-30:649:119:109#Response_reg:665:2.7e-23:781:117:111#Response_reg:807:1.09e-27:924:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000001.1::G00006
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span576512-581259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_02740RefSeq proteinWP_007049424.1
Context group ID
GCF_024460395::NZ_JANFYI010000001.1::G00006Context members
NE604_RS02740NE604_RS02745
Partner locus tags
NE604_RS02740NE604_RS02745
Partner old locus tags
NE604_02740NE604_02745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007049424.1Primary protein accession used for annex mappings.
UniProt accessionB1C8C3Primary UniProt accession resolved in the annex database.
UniProt IDB1C8C3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS02740Primary locus identifier stored in the genes table.
Old locus tagNE604_02740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000001.1Sequence record reported by the local genomic context database.
Genomic interval576 512-579 298 nt2 787 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span576 512-581 259 ntGCF_024460395::NZ_JANFYI010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span576 512-581 259 nt4 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
576 512 nt581 259 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS02740GCF_024460395#NE604_RS02740
HKHybridCurrent focus
576 512-579 298 nt · Reverse (-)
NE604_RS02745GCF_024460395#NE604_RS02745
HKHybrid
579 484-581 259 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS02925Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0355312
Simplified PFAM architecture for HKOC_0355312
PFAM domain coverage: 479 / 928 aa (51.6%)
1 aa928 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[304-365] | HisKA[418-484] | HATPase_c[532-648] | Response_reg[665-780] | Response_reg[807-923]
- Domain count: 5
- Matched identifier: HKOC_0355312
- Positioned domains: PAS_3 304-365 ; HisKA 418-484 ; HATPase_c 532-648 ; Response_reg 665-780 ; Response_reg 807-923
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS02925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key