1 Response_reg#1
5-115 aa · 111 aa · 43.2% of protein
Raw token
Response_reg:5:1.63e-21:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS02045
Response regulator Spo0A family
Anaerofustis stercorihominis · GCF_024460395
ClassRRTypeSpo0ALength257 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460395#NE604_RS02045Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage215 / 257 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
146-249 aa · 104 aa · 40.5% of protein
Raw token
Spo0A_C:146:1.25e-66:249:104:104- Raw architecture: Response_reg:5:1.63e-21:115:111:111#Spo0A_C:146:1.25e-66:249:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460395::NZ_JANFYI010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span421089-421862Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_02045RefSeq proteinWP_007049274.1
Context group ID
GCF_024460395::NZ_JANFYI010000001.1::G00004Context members
NE604_RS02045
Partner locus tags
NE604_RS02045
Partner old locus tags
NE604_02045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007049274.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DYL3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DYL3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed9 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS02045Primary locus identifier stored in the genes table.
Old locus tagNE604_02045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000001.1Sequence record reported by the local genomic context database.
Genomic interval421 089-421 862 nt774 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span421 089-421 862 ntGCF_024460395::NZ_JANFYI010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span421 089-421 862 nt774 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
421 089 nt421 862 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE604_RS02045GCF_024460395#NE604_RS02045
RRSpo0ACurrent focus
421 089-421 862 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS02240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0667104
Simplified PFAM architecture for RROC_0667104
PFAM domain coverage: 219 / 257 aa (85.2%)
1 aa257 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[5-119] | Spo0A_C[146-249]
- Domain count: 2
- Matched identifier: RROC_0667104
- Positioned domains: Response_reg 5-119 ; Response_reg 5-119 ; Spo0A_C 146-249 ; Spo0A_C 146-249
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS02240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key