1 SBP_bac_3#1
48-252 aa · 205 aa · 22.4% of protein
Raw token
SBP_bac_3:48:6.8e-17:252:220:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS00455
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength915 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS00455Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length915 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage703 / 915 aa (76.8%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa915 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
274-471 aa · 198 aa · 21.6% of protein
Raw token
SBP_bac_3:274:1.1e-18:471:213:2243 HisKA#3
544-609 aa · 66 aa · 7.2% of protein
Raw token
HisKA:544:2.04e-17:609:66:644 HATPase_c#4
656-772 aa · 117 aa · 12.8% of protein
Raw token
HATPase_c:656:1.96e-30:772:117:1095 Response_reg#5
795-911 aa · 117 aa · 12.8% of protein
Raw token
Response_reg:795:6.08e-30:911:117:111- Raw architecture: SBP_bac_3:48:6.8e-17:252:220:224#SBP_bac_3:274:1.1e-18:471:213:224#HisKA:544:2.04e-17:609:66:64#HATPase_c:656:1.96e-30:772:117:109#Response_reg:795:6.08e-30:911:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000001.1::G00002
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span109121-114944Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_00455RefSeq proteinWP_256146052.1
Context group ID
GCF_024460395::NZ_JANFYI010000001.1::G00002Context members
NE604_RS00455NE604_RS00460
Partner locus tags
NE604_RS00455NE604_RS00460
Partner old locus tags
NE604_00455NE604_00460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146052.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS00455Primary locus identifier stored in the genes table.
Old locus tagNE604_00455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000001.1Sequence record reported by the local genomic context database.
Genomic interval109 121-111 868 nt2 748 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span109 121-114 944 ntGCF_024460395::NZ_JANFYI010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span109 121-114 944 nt5 824 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 121 nt114 944 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS00455GCF_024460395#NE604_RS00455
HKHybridCurrent focus
109 121-111 868 nt · Forward (+)
NE604_RS00460GCF_024460395#NE604_RS00460
HKHybrid
112 050-114 944 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS00455The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0382670
Simplified PFAM architecture for HKOC_0382670
PFAM domain coverage: 702 / 915 aa (76.7%)
1 aa915 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[48-251] | SBP_bac_3[274-472] | HisKA[544-609] | HATPase_c[656-771] | Response_reg[795-911]
- Domain count: 5
- Matched identifier: HKOC_0382670
- Positioned domains: SBP_bac_3 48-251 ; SBP_bac_3 274-472 ; HisKA 544-609 ; HATPase_c 656-771 ; Response_reg 795-911
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS00455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key