1 Response_reg#1
8-121 aa · 114 aa · 31.5% of protein
Raw token
Response_reg:8:4.33e-25:121:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS01820
Response regulator RpfG family
Anaerofustis stercorihominis · GCF_024460395
ClassRRTypeRpfGLength362 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS01820Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 362 aa (60.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation2 items
2 HD#2
205-308 aa · 104 aa · 28.7% of protein
Raw token
HD:205:0.000000000000492:308:104:110- Raw architecture: Response_reg:8:4.33e-25:121:115:111#HD:205:0.000000000000492:308:104:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span378339-383084Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_01820RefSeq proteinWP_117532117.1
Context group ID
GCF_024460395::NZ_JANFYI010000001.1::G00003Context members
NE604_RS01820NE604_RS01825
Partner locus tags
NE604_RS01820NE604_RS01825
Partner old locus tags
NE604_01820NE604_01825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117532117.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DYT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DYT1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS01820Primary locus identifier stored in the genes table.
Old locus tagNE604_01820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000001.1Sequence record reported by the local genomic context database.
Genomic interval378 339-379 427 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span378 339-383 084 ntGCF_024460395::NZ_JANFYI010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span378 339-383 084 nt4 746 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
378 339 nt383 084 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS01820GCF_024460395#NE604_RS01820
RRRpfGCurrent focus
378 339-379 427 nt · Forward (+)
NE604_RS01825GCF_024460395#NE604_RS01825
HKHybrid
379 452-383 084 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS06405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0455566
Simplified PFAM architecture for RROC_0455566
PFAM domain coverage: 242 / 362 aa (66.9%)
1 aa362 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[8-120] | HD_5[200-328]
- Domain count: 2
- Matched identifier: RROC_0455566
- Positioned domains: Response_reg 8-120 ; Response_reg 8-120 ; HD_5 200-328 ; HD_5 200-328
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS06405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key