1 HisKA#1
358-424 aa · 67 aa · 7.7% of protein
Raw token
HisKA:358:0.000000000000012:424:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS12565
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS12565Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage420 / 869 aa (48.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
471-588 aa · 118 aa · 13.6% of protein
Raw token
HATPase_c:471:9.59e-30:588:118:1093 Response_reg#3
605-722 aa · 118 aa · 13.6% of protein
Raw token
Response_reg:605:2.22e-27:722:118:1114 Response_reg#4
748-864 aa · 117 aa · 13.5% of protein
Raw token
Response_reg:748:7.02e-27:864:117:111- Raw architecture: HisKA:358:0.000000000000012:424:67:64#HATPase_c:471:9.59e-30:588:118:109#Response_reg:605:2.22e-27:722:118:111#Response_reg:748:7.02e-27:864:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000001.1::G00005
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span523034-528434Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_02555RefSeq proteinWP_256146215.1
Context group ID
GCF_024460395::NZ_JANFYI010000001.1::G00005Context members
NE604_RS02550NE604_RS12565
Partner locus tags
NE604_RS02550NE604_RS12565
Partner old locus tags
NE604_02550NE604_02555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146215.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS12565Primary locus identifier stored in the genes table.
Old locus tagNE604_02555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000001.1Sequence record reported by the local genomic context database.
Genomic interval525 825-528 434 nt2 610 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span523 034-528 434 ntGCF_024460395::NZ_JANFYI010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span523 034-528 434 nt5 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
523 034 nt528 434 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS02550GCF_024460395#NE604_RS02550
HKHybrid
523 034-525 652 nt · Reverse (-)
NE604_RS12565GCF_024460395#NE604_RS12565
HKHybridCurrent focus
525 825-528 434 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS12565The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0460324
Simplified PFAM architecture for HKOC_0460324
PFAM domain coverage: 418 / 869 aa (48.1%)
1 aa869 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[358-424] | HATPase_c[471-587] | Response_reg[605-722] | Response_reg[748-863]
- Domain count: 4
- Matched identifier: HKOC_0460324
- Positioned domains: HisKA 358-424 ; HATPase_c 471-587 ; Response_reg 605-722 ; Response_reg 748-863
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS12565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key