1 GGDEF#1
261-408 aa · 148 aa · 18.8% of protein
Raw token
GGDEF:261:3.1e-40:408:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS12110
Response regulator, RpfG family
Anaerofustis stercorihominis · GCF_024460395
ClassRRTypeRpfGLength786 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460395#NE604_RS12110Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length786 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage362 / 786 aa (46.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa786 aa
Domain-by-domain annotation3 items
2 Response_reg#2
436-540 aa · 105 aa · 13.4% of protein
Raw token
Response_reg:436:7.54e-24:540:108:1113 HD#3
628-736 aa · 109 aa · 13.9% of protein
Raw token
HD:628:0.000000000000884:736:109:110- Raw architecture: GGDEF:261:3.1e-40:408:157:160#Response_reg:436:7.54e-24:540:108:111#HD:628:0.000000000000884:736:109:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460395::NZ_JANFYI010000230.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span511718-514078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_12110RefSeq proteinWP_256146884.1
Context group ID
GCF_024460395::NZ_JANFYI010000230.1::G00016Context members
NE604_RS12110
Partner locus tags
NE604_RS12110
Partner old locus tags
NE604_12110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146884.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS12110Primary locus identifier stored in the genes table.
Old locus tagNE604_12110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000230.1Sequence record reported by the local genomic context database.
Genomic interval511 718-514 078 nt2 361 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span511 718-514 078 ntGCF_024460395::NZ_JANFYI010000230.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000230.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000230.1All displayed genes belong to this local TCS context.
Neighborhood span511 718-514 078 nt2 361 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
511 718 nt514 078 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE604_RS12110GCF_024460395#NE604_RS12110
RRRpfGCurrent focus
511 718-514 078 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS12110The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016771
Simplified PFAM architecture for RROC_0016771
PFAM domain coverage: 400 / 786 aa (50.9%)
1 aa786 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[260-407] | Response_reg[436-547] | HD_5[617-756]
- Domain count: 3
- Matched identifier: RROC_0016771
- Positioned domains: GGDEF 260-407 ; Response_reg 436-547 ; HD_5 617-756
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS12110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key