1 Response_reg#1
139-249 aa · 111 aa · 42.2% of protein
Raw token
Response_reg:139:1.06e-29:249:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS10225
Response regulator, unclassified
Anaerofustis stercorihominis · GCF_024460395
ClassRRTypeunclassifiedLength263 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS10225Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 263 aa (42.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:139:1.06e-29:249:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000230.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122502-124115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_10225RefSeq proteinWP_256146784.1
Context group ID
GCF_024460395::NZ_JANFYI010000230.1::G00013Context members
NE604_RS10220NE604_RS10225
Partner locus tags
NE604_RS10220NE604_RS10225
Partner old locus tags
NE604_10220NE604_10225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146784.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS10225Primary locus identifier stored in the genes table.
Old locus tagNE604_10225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000230.1Sequence record reported by the local genomic context database.
Genomic interval123 324-124 115 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 502-124 115 ntGCF_024460395::NZ_JANFYI010000230.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000230.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000230.1All displayed genes belong to this local TCS context.
Neighborhood span122 502-124 115 nt1 614 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 502 nt124 115 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS10220GCF_024460395#NE604_RS10220
HKClassic
122 502-123 272 nt · Forward (+)
NE604_RS10225GCF_024460395#NE604_RS10225
RRunclassifiedCurrent focus
123 324-124 115 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS10225The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0642057
Simplified PFAM architecture for RROC_0642057
PFAM domain coverage: 116 / 263 aa (44.1%)
1 aa263 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[139-254]
- Domain count: 1
- Matched identifier: RROC_0642057
- Positioned domains: Response_reg 139-254
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS10225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key