1 Response_reg#1
1-106 aa · 106 aa · 42.1% of protein
Raw token
Response_reg:1:3.72e-18:106:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS09310
Response regulator, FrzZ family
Anaerofustis stercorihominis · GCF_024460395
ClassRRTypeFrzZLength252 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS09310Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage224 / 252 aa (88.9%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 Response_reg#2
132-249 aa · 118 aa · 46.8% of protein
Raw token
Response_reg:132:5.01e-27:249:118:111- Raw architecture: Response_reg:1:3.72e-18:106:108:111#Response_reg:132:5.01e-27:249:118:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000229.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67899-69393Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_09310RefSeq proteinWP_256146735.1
Context group ID
GCF_024460395::NZ_JANFYI010000229.1::G00018Context members
NE604_RS09310NE604_RS09315
Partner locus tags
NE604_RS09310NE604_RS09315
Partner old locus tags
NE604_09310NE604_09315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146735.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS09310Primary locus identifier stored in the genes table.
Old locus tagNE604_09310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000229.1Sequence record reported by the local genomic context database.
Genomic interval67 899-68 657 nt759 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 899-69 393 ntGCF_024460395::NZ_JANFYI010000229.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000229.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000229.1All displayed genes belong to this local TCS context.
Neighborhood span67 899-69 393 nt1 495 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 899 nt69 393 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS09310GCF_024460395#NE604_RS09310
RRFrzZCurrent focus
67 899-68 657 nt · Reverse (-)
NE604_RS09315GCF_024460395#NE604_RS09315
HKClassic
68 692-69 393 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS09310The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0708036
Simplified PFAM architecture for RROC_0708036
PFAM domain coverage: 220 / 252 aa (87.3%)
1 aa252 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[3-105] | Response_reg[132-248]
- Domain count: 2
- Matched identifier: RROC_0708036
- Positioned domains: Response_reg 3-105 ; Response_reg 132-248
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS09310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key