1 HAMP#1
380-433 aa · 54 aa · 4.1% of protein
Raw token
HAMP:380:0.00000769:433:54:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS08980
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength1313 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460395#NE604_RS08980Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
HAMPPACGGDEFHisKAHATPase_cResponse_reg
Protein length1313 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage533 / 1313 aa (40.6%)Merged over positioned domains only.
Domain description1 HAMP,1 PAC,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1313 aa
Domain-by-domain annotation6 items
2 PAC#2
547-578 aa · 32 aa · 2.4% of protein
Raw token
PAC:547:0.000022:578:32:433 GGDEF#3
591-739 aa · 149 aa · 11.3% of protein
Raw token
GGDEF:591:2.76e-21:739:162:1604 HisKA#4
939-1005 aa · 67 aa · 5.1% of protein
Raw token
HisKA:939:5.41e-19:1005:67:645 HATPase_c#5
1051-1164 aa · 114 aa · 8.7% of protein
Raw token
HATPase_c:1051:1.89e-27:1164:114:1096 Response_reg#6
1191-1307 aa · 117 aa · 8.9% of protein
Raw token
Response_reg:1191:1.93e-31:1307:117:111- Raw architecture: HAMP:380:0.00000769:433:54:69#PAC:547:0.000022:578:32:43#GGDEF:591:2.76e-21:739:162:160#HisKA:939:5.41e-19:1005:67:64#HATPase_c:1051:1.89e-27:1164:114:109#Response_reg:1191:1.93e-31:1307:117:111
- Domain description: 1 HAMP,1 PAC,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460395::NZ_JANFYI010000229.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7613-11554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_08980RefSeq proteinWP_256146716.1
Context group ID
GCF_024460395::NZ_JANFYI010000229.1::G00017Context members
NE604_RS08980
Partner locus tags
NE604_RS08980
Partner old locus tags
NE604_08980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146716.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS08980Primary locus identifier stored in the genes table.
Old locus tagNE604_08980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000229.1Sequence record reported by the local genomic context database.
Genomic interval7 613-11 554 nt3 942 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 613-11 554 ntGCF_024460395::NZ_JANFYI010000229.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000229.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000229.1All displayed genes belong to this local TCS context.
Neighborhood span7 613-11 554 nt3 942 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 613 nt11 554 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE604_RS08980GCF_024460395#NE604_RS08980
HKHybridCurrent focus
7 613-11 554 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS08980The current gene is the representative for this cluster.
PFAM architectureMCP-like_PDC_1 + GGDEF + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0119614
Simplified PFAM architecture for HKOC_0119614
PFAM domain coverage: 496 / 1313 aa (37.8%)
1 aa1313 aa
MCP-like_PDC_1GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: MCP-like_PDC_1 + GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: MCP-like_PDC_1[213-262] | GGDEF[591-738] | HisKA[939-1005] | HATPase_c[1051-1166] | Response_reg[1191-1305]
- Domain count: 5
- Matched identifier: HKOC_0119614
- Positioned domains: MCP-like_PDC_1 213-262 ; GGDEF 591-738 ; HisKA 939-1005 ; HATPase_c 1051-1166 ; Response_reg 1191-1305
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS08980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key