1 Response_reg#1
8-69 aa · 62 aa · 89.9% of protein
Raw token
Response_reg:8:1.11e-19:69:63:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS08910
Response regulator, CheY family
Anaerofustis stercorihominis · GCF_024460395
ClassRRTypeCheYLength69 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460395#NE604_RS08910Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length69 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage62 / 69 aa (89.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa69 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:8:1.11e-19:69:63:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460395::NZ_JANFYI010000218.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_08910RefSeq proteinWP_256146710.1
Context group ID
GCF_024460395::NZ_JANFYI010000218.1::G00008Context members
NE604_RS08910
Partner locus tags
NE604_RS08910
Partner old locus tags
NE604_08910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146710.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS08910Primary locus identifier stored in the genes table.
Old locus tagNE604_08910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000218.1Sequence record reported by the local genomic context database.
Genomic interval1-208 nt208 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-208 ntGCF_024460395::NZ_JANFYI010000218.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000218.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000218.1All displayed genes belong to this local TCS context.
Neighborhood span1-208 nt208 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt208 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE604_RS08910GCF_024460395#NE604_RS08910
RRCheYCurrent focus
1-208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS08045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463188
Simplified PFAM architecture for RROC_1463188
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[150-222]
- Domain count: 2
- Matched identifier: RROC_1463188
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 150-222 ; Trans_reg_C 150-222
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS08045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key