1 KdpD#1
22-229 aa · 208 aa · 23.2% of protein
Raw token
KdpD:22:3.59e-136:229:208:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS05890
Histidine kinase, Classic
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeClassicLength896 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS05890Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
KdpDGAF_3HisKAHATPase_c
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage513 / 896 aa (57.3%)Merged over positioned domains only.
Domain description1 KdpD,1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation4 items
2 GAF_3#2
525-649 aa · 125 aa · 14.0% of protein
Raw token
GAF_3:525:0.000000255:649:130:1293 HisKA#3
669-736 aa · 68 aa · 7.6% of protein
Raw token
HisKA:669:0.00000000000167:736:68:644 HATPase_c#4
780-891 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:780:5.64e-28:891:112:109- Raw architecture: KdpD:22:3.59e-136:229:208:210#GAF_3:525:0.000000255:649:130:129#HisKA:669:0.00000000000167:736:68:64#HATPase_c:780:5.64e-28:891:112:109
- Domain description: 1 KdpD,1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000003.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80342-83732Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_05890RefSeq proteinWP_256146462.1
Context group ID
GCF_024460395::NZ_JANFYI010000003.1::G00024Context members
NE604_RS05885NE604_RS05890
Partner locus tags
NE604_RS05885NE604_RS05890
Partner old locus tags
NE604_05885NE604_05890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS05890Primary locus identifier stored in the genes table.
Old locus tagNE604_05890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000003.1Sequence record reported by the local genomic context database.
Genomic interval81 042-83 732 nt2 691 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 342-83 732 ntGCF_024460395::NZ_JANFYI010000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000003.1All displayed genes belong to this local TCS context.
Neighborhood span80 342-83 732 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 342 nt83 732 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS05885GCF_024460395#NE604_RS05885
RROmpR
80 342-81 049 nt · Reverse (-)
NE604_RS05890GCF_024460395#NE604_RS05890
HKClassicCurrent focus
81 042-83 732 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS05890The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0414785
Simplified PFAM architecture for HKOC_0414785
PFAM domain coverage: 490 / 896 aa (54.7%)
1 aa896 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[22-229] | DUF4118[401-504] | HisKA[669-736] | HATPase_c[781-890]
- Domain count: 4
- Matched identifier: HKOC_0414785
- Positioned domains: KdpD 22-229 ; DUF4118 401-504 ; HisKA 669-736 ; HATPase_c 781-890
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS05890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key