1 PAS_9#1
197-288 aa · 92 aa · 9.5% of protein
Raw token
PAS_9:197:0.0000038:288:94:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS05505
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength968 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460395#NE604_RS05505Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length968 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage502 / 968 aa (51.9%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa968 aa
Domain-by-domain annotation5 items
2 HisKA#2
457-523 aa · 67 aa · 6.9% of protein
Raw token
HisKA:457:2.1e-16:523:67:643 HATPase_c#3
570-687 aa · 118 aa · 12.2% of protein
Raw token
HATPase_c:570:8.8e-25:687:118:1094 Response_reg#4
708-814 aa · 107 aa · 11.1% of protein
Raw token
Response_reg:708:5.55e-19:814:107:1115 Response_reg#5
847-964 aa · 118 aa · 12.2% of protein
Raw token
Response_reg:847:1.59e-33:964:118:111- Raw architecture: PAS_9:197:0.0000038:288:94:102#HisKA:457:2.1e-16:523:67:64#HATPase_c:570:8.8e-25:687:118:109#Response_reg:708:5.55e-19:814:107:111#Response_reg:847:1.59e-33:964:118:111
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460395::NZ_JANFYI010000002.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span316864-319770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_05505RefSeq proteinWP_256146433.1
Context group ID
GCF_024460395::NZ_JANFYI010000002.1::G00022Context members
NE604_RS05505
Partner locus tags
NE604_RS05505
Partner old locus tags
NE604_05505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146433.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS05505Primary locus identifier stored in the genes table.
Old locus tagNE604_05505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000002.1Sequence record reported by the local genomic context database.
Genomic interval316 864-319 770 nt2 907 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span316 864-319 770 ntGCF_024460395::NZ_JANFYI010000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span316 864-319 770 nt2 907 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
316 864 nt319 770 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE604_RS05505GCF_024460395#NE604_RS05505
HKHybridCurrent focus
316 864-319 770 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS05505The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0313477
Simplified PFAM architecture for HKOC_0313477
PFAM domain coverage: 507 / 968 aa (52.4%)
1 aa968 aa
PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_9[197-288] | HisKA[457-523] | HATPase_c[571-686] | Response_reg[708-821] | Response_reg[847-964]
- Domain count: 5
- Matched identifier: HKOC_0313477
- Positioned domains: PAS_9 197-288 ; HisKA 457-523 ; HATPase_c 571-686 ; Response_reg 708-821 ; Response_reg 847-964
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS05505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key