1 HAMP#1
182-252 aa · 71 aa · 14.8% of protein
Raw token
HAMP:182:0.00000000067:252:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS04040
Histidine kinase, Classic
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS04040Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 479 aa (52.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
256-321 aa · 66 aa · 13.8% of protein
Raw token
HisKA:256:0.0000000000000035:321:66:643 HATPase_c#3
366-477 aa · 112 aa · 23.4% of protein
Raw token
HATPase_c:366:6.79e-30:477:112:109- Raw architecture: HAMP:182:0.00000000067:252:71:69#HisKA:256:0.0000000000000035:321:66:64#HATPase_c:366:6.79e-30:477:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41666-43787Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_04040RefSeq proteinWP_256146303.1
Context group ID
GCF_024460395::NZ_JANFYI010000002.1::G00021Context members
NE604_RS04035NE604_RS04040
Partner locus tags
NE604_RS04035NE604_RS04040
Partner old locus tags
NE604_04035NE604_04040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146303.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS04040Primary locus identifier stored in the genes table.
Old locus tagNE604_04040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000002.1Sequence record reported by the local genomic context database.
Genomic interval42 348-43 787 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 666-43 787 ntGCF_024460395::NZ_JANFYI010000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span41 666-43 787 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 666 nt43 787 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS04035GCF_024460395#NE604_RS04035
RROmpR
41 666-42 364 nt · Forward (+)
NE604_RS04040GCF_024460395#NE604_RS04040
HKClassicCurrent focus
42 348-43 787 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS04040The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1632814
Simplified PFAM architecture for HKOC_1632814
PFAM domain coverage: 225 / 479 aa (47.0%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[203-251] | HisKA[257-321] | HATPase_c[367-477]
- Domain count: 3
- Matched identifier: HKOC_1632814
- Positioned domains: HAMP 203-251 ; HisKA 257-321 ; HATPase_c 367-477
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS04040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key