1 dCache_1#1
169-281 aa · 113 aa · 9.8% of protein
Raw token
dCache_1:169:0.000000129:281:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS03870
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength1148 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460395#NE604_RS03870Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_regSBP_bac_1
Protein length1148 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage706 / 1148 aa (61.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg,1 SBP_bac_1Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1148 aa
Domain-by-domain annotation5 items
2 HisKA#2
333-399 aa · 67 aa · 5.8% of protein
Raw token
HisKA:333:1.78e-16:399:67:643 HATPase_c#3
446-560 aa · 115 aa · 10.0% of protein
Raw token
HATPase_c:446:3.09e-29:560:115:1094 Response_reg#4
584-700 aa · 117 aa · 10.2% of protein
Raw token
Response_reg:584:1.98e-27:700:117:1115 SBP_bac_1#5
763-1056 aa · 294 aa · 25.6% of protein
Raw token
SBP_bac_1:763:3.35e-16:1056:309:294- Raw architecture: dCache_1:169:0.000000129:281:113:195#HisKA:333:1.78e-16:399:67:64#HATPase_c:446:3.09e-29:560:115:109#Response_reg:584:1.98e-27:700:117:111#SBP_bac_1:763:3.35e-16:1056:309:294
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg,1 SBP_bac_1
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460395::NZ_JANFYI010000002.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span10119-13565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_03870RefSeq proteinWP_256146293.1
Context group ID
GCF_024460395::NZ_JANFYI010000002.1::G00020Context members
NE604_RS03870
Partner locus tags
NE604_RS03870
Partner old locus tags
NE604_03870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146293.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS03870Primary locus identifier stored in the genes table.
Old locus tagNE604_03870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000002.1Sequence record reported by the local genomic context database.
Genomic interval10 119-13 565 nt3 447 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 119-13 565 ntGCF_024460395::NZ_JANFYI010000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span10 119-13 565 nt3 447 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 119 nt13 565 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE604_RS03870GCF_024460395#NE604_RS03870
HKHybridCurrent focus
10 119-13 565 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS03870The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + SBP_bac_14 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0200559
Simplified PFAM architecture for HKOC_0200559
PFAM domain coverage: 591 / 1148 aa (51.5%)
1 aa1148 aa
HisKAHATPase_cResponse_regSBP_bac_1
- Simplified architecture: HisKA + HATPase_c + Response_reg + SBP_bac_1
- Raw architecture: HisKA[333-399] | HATPase_c[446-559] | Response_reg[584-699] | SBP_bac_1[763-1056]
- Domain count: 4
- Matched identifier: HKOC_0200559
- Positioned domains: HisKA 333-399 ; HATPase_c 446-559 ; Response_reg 584-699 ; SBP_bac_1 763-1056
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS03870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key