1 PTS_EIIC#1
27-347 aa · 321 aa · 33.3% of protein
Raw token
PTS_EIIC:27:2.93e-27:347:333:315P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE604_RS00460
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_024460395
ClassHKTypeHybridLength964 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460395#NE604_RS00460Stable P2CS identifier used across views.
GenomeGCF_024460395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PTS_EIICHisKAHATPase_cResponse_reg
Protein length964 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage620 / 964 aa (64.3%)Merged over positioned domains only.
Domain description1 PTS_EIIC,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa964 aa
Domain-by-domain annotation4 items
2 HisKA#2
587-653 aa · 67 aa · 7.0% of protein
Raw token
HisKA:587:5.02e-18:653:67:643 HATPase_c#3
699-816 aa · 118 aa · 12.2% of protein
Raw token
HATPase_c:699:8.32e-27:816:118:1094 Response_reg#4
843-956 aa · 114 aa · 11.8% of protein
Raw token
Response_reg:843:9.36e-28:956:114:111- Raw architecture: PTS_EIIC:27:2.93e-27:347:333:315#HisKA:587:5.02e-18:653:67:64#HATPase_c:699:8.32e-27:816:118:109#Response_reg:843:9.36e-28:956:114:111
- Domain description: 1 PTS_EIIC,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460395::NZ_JANFYI010000001.1::G00002
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span109121-114944Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE604_00460RefSeq proteinWP_256146053.1
Context group ID
GCF_024460395::NZ_JANFYI010000001.1::G00002Context members
NE604_RS00455NE604_RS00460
Partner locus tags
NE604_RS00455NE604_RS00460
Partner old locus tags
NE604_00455NE604_00460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256146053.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE604_RS00460Primary locus identifier stored in the genes table.
Old locus tagNE604_00460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYI010000001.1Sequence record reported by the local genomic context database.
Genomic interval112 050-114 944 nt2 895 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span109 121-114 944 ntGCF_024460395::NZ_JANFYI010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460395::NZ_JANFYI010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span109 121-114 944 nt5 824 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 121 nt114 944 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE604_RS00455GCF_024460395#NE604_RS00455
HKHybrid
109 121-111 868 nt · Forward (+)
NE604_RS00460GCF_024460395#NE604_RS00460
HKHybridCurrent focus
112 050-114 944 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460395#NE604_RS00460The current gene is the representative for this cluster.
PFAM architecturePTS_EIIC + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0315665
Simplified PFAM architecture for HKOC_0315665
PFAM domain coverage: 622 / 964 aa (64.5%)
1 aa964 aa
PTS_EIICHisKAHATPase_cResponse_reg
- Simplified architecture: PTS_EIIC + HisKA + HATPase_c + Response_reg
- Raw architecture: PTS_EIIC[27-347] | HisKA[587-653] | HATPase_c[699-816] | Response_reg[843-958]
- Domain count: 4
- Matched identifier: HKOC_0315665
- Positioned domains: PTS_EIIC 27-347 ; HisKA 587-653 ; HATPase_c 699-816 ; Response_reg 843-958
Cluster members and taxonomy
Representative gene: GCF_024460395#NE604_RS00460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_024460395
AssemblyASM2446039v1 · Contighaploid
Genome composition2 407 739 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 40 · HK 24 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key