1 His_kinase#1
367-441 aa · 75 aa · 13.1% of protein
Raw token
His_kinase:367:1.49e-21:441:75:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS07525
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength573 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS07525Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length573 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 573 aa (32.3%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa573 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
461-570 aa · 110 aa · 19.2% of protein
Raw token
HATPase_c:461:0.000000114:570:110:109- Raw architecture: His_kinase:367:1.49e-21:441:75:80#HATPase_c:461:0.000000114:570:110:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000009.1::G00090
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51914-53635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_07495RefSeq proteinWP_195841721.1
Context group ID
GCF_009696275::NZ_VUMI01000009.1::G00090Context members
FYJ45_RS07525
Partner locus tags
FYJ45_RS07525
Partner old locus tags
FYJ45_07495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195841721.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS07525Primary locus identifier stored in the genes table.
Old locus tagFYJ45_07495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000009.1Sequence record reported by the local genomic context database.
Genomic interval51 914-53 635 nt1 722 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 914-53 635 ntGCF_009696275::NZ_VUMI01000009.1::G00090
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000009.1::G00090Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000009.1All displayed genes belong to this local TCS context.
Neighborhood span51 914-53 635 nt1 722 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 914 nt53 635 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS07525GCF_009696275#FYJ45_RS07525
HKClassicCurrent focus
51 914-53 635 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_945899955#P6989_RS07775Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1166955
Simplified PFAM architecture for HKOC_1166955
PFAM domain coverage: 183 / 580 aa (31.6%)
1 aa580 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[374-448] | HATPase_c[468-575]
- Domain count: 2
- Matched identifier: HKOC_1166955
- Positioned domains: His_kinase 374-448 ; HATPase_c 468-575
Cluster members and taxonomy
Representative gene: GCF_945899955#P6989_RS07775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key