1 Response_reg#1
4-116 aa · 113 aa · 45.2% of protein
Raw token
Response_reg:4:5.29e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS02100
Response regulator, unclassified
Eisenbergiella porci · GCF_009696275
ClassRRTypeunclassifiedLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS02100Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 250 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
157-197 aa · 41 aa · 16.4% of protein
Raw token
HTH_AraC:157:0.0000121:197:41:423 HTH_AraC#3
211-248 aa · 38 aa · 15.2% of protein
Raw token
HTH_AraC:211:0.000000000393:248:38:42- Raw architecture: Response_reg:4:5.29e-33:116:113:111#HTH_AraC:157:0.0000121:197:41:42#HTH_AraC:211:0.000000000393:248:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span210622-213104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_02075RefSeq proteinWP_154463227.1
Context group ID
GCF_009696275::NZ_VUMI01000002.1::G00029Context members
FYJ45_RS02095FYJ45_RS02100
Partner locus tags
FYJ45_RS02095FYJ45_RS02100
Partner old locus tags
FYJ45_02070FYJ45_02075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463227.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VVW7Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VVW7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS02100Primary locus identifier stored in the genes table.
Old locus tagFYJ45_02075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000002.1Sequence record reported by the local genomic context database.
Genomic interval212 352-213 104 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span210 622-213 104 ntGCF_009696275::NZ_VUMI01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span210 622-213 104 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
210 622 nt213 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS02095GCF_009696275#FYJ45_RS02095
HKClassic
210 622-212 349 nt · Forward (+)
FYJ45_RS02100GCF_009696275#FYJ45_RS02100
RRunclassifiedCurrent focus
212 352-213 104 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS02100The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0724989
Simplified PFAM architecture for RROC_0724989
PFAM domain coverage: 193 / 250 aa (77.2%)
1 aa250 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[170-249]
- Domain count: 2
- Matched identifier: RROC_0724989
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 170-249 ; HTH_18 170-249
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS02100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key