1 Response_reg#1
5-117 aa · 113 aa · 21.7% of protein
Raw token
Response_reg:5:6.14e-24:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS00580
Response regulator, unclassified
Eisenbergiella porci · GCF_009696275
ClassRRTypeunclassifiedLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS00580Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 521 aa (35.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-467 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:425:0.0000000107:467:43:423 HTH_AraC#3
488-515 aa · 28 aa · 5.4% of protein
Raw token
HTH_AraC:488:0.000000128:515:28:42- Raw architecture: Response_reg:5:6.14e-24:117:113:111#HTH_AraC:425:0.0000000107:467:43:42#HTH_AraC:488:0.000000128:515:28:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114371-117765Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_00585RefSeq proteinWP_154462985.1
Context group ID
GCF_009696275::NZ_VUMI01000001.1::G00003Context members
FYJ45_RS31615FYJ45_RS00580
Partner locus tags
FYJ45_RS31615FYJ45_RS00580
Partner old locus tags
FYJ45_00580FYJ45_00585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154462985.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VXC5Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VXC5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS00580Primary locus identifier stored in the genes table.
Old locus tagFYJ45_00585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000001.1Sequence record reported by the local genomic context database.
Genomic interval116 200-117 765 nt1 566 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span114 371-117 765 ntGCF_009696275::NZ_VUMI01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span114 371-117 765 nt3 395 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 371 nt117 765 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS31615GCF_009696275#FYJ45_RS31615
HKClassic
114 371-116 203 nt · Reverse (-)
FYJ45_RS00580GCF_009696275#FYJ45_RS00580
RRunclassifiedCurrent focus
116 200-117 765 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS00580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0124906
Simplified PFAM architecture for RROC_0124906
PFAM domain coverage: 191 / 521 aa (36.7%)
1 aa521 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[439-517]
- Domain count: 2
- Matched identifier: RROC_0124906
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 439-517 ; HTH_18 439-517
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS00580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key