1 Response_reg#1
6-88 aa · 83 aa · 35.2% of protein
Raw token
Response_reg:6:0.000000000000426:88:85:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS00650
Response regulator LytTR family
Eisenbergiella porci · GCF_009696275
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS00650Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 236 aa (74.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
135-227 aa · 93 aa · 39.4% of protein
Raw token
LytTR:135:1.48e-17:227:99:98- Raw architecture: Response_reg:6:0.000000000000426:88:85:111#LytTR:135:1.48e-17:227:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span139574-140284Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_00655RefSeq proteinWP_154462999.1
Context group ID
GCF_009696275::NZ_VUMI01000001.1::G00004Context members
FYJ45_RS00650
Partner locus tags
FYJ45_RS00650
Partner old locus tags
FYJ45_00655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154462999.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VV63Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VV63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS00650Primary locus identifier stored in the genes table.
Old locus tagFYJ45_00655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000001.1Sequence record reported by the local genomic context database.
Genomic interval139 574-140 284 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span139 574-140 284 ntGCF_009696275::NZ_VUMI01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span139 574-140 284 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 574 nt140 284 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS00650GCF_009696275#FYJ45_RS00650
RRLytTRCurrent focus
139 574-140 284 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS00650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0998100
Simplified PFAM architecture for RROC_0998100
PFAM domain coverage: 193 / 236 aa (81.8%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-113] | LytTR[138-221]
- Domain count: 2
- Matched identifier: RROC_0998100
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; LytTR 138-221 ; LytTR 138-221
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS00650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key