1 His_kinase#1
374-448 aa · 75 aa · 12.9% of protein
Raw token
His_kinase:374:1.28e-21:448:75:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P6989_RS07775
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_945899955
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_945899955#P6989_RS07775Stable P2CS identifier used across views.
GenomeGCF_945899955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 580 aa (31.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
468-577 aa · 110 aa · 19.0% of protein
Raw token
HATPase_c:468:0.000000124:577:110:109- Raw architecture: His_kinase:374:1.28e-21:448:75:80#HATPase_c:468:0.000000124:577:110:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_945899955::NZ_CAMDIR010000009.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51830-53572Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_945899955::NZ_CAMDIR010000009.1::G00026Context members
P6989_RS07775
Partner locus tags
P6989_RS07775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_154464108.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP6989_RS07775Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAMDIR010000009.1Sequence record reported by the local genomic context database.
Genomic interval51 830-53 572 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 830-53 572 ntGCF_945899955::NZ_CAMDIR010000009.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_945899955::NZ_CAMDIR010000009.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAMDIR010000009.1All displayed genes belong to this local TCS context.
Neighborhood span51 830-53 572 nt1 743 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 830 nt53 572 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P6989_RS07775GCF_945899955#P6989_RS07775
HKClassicCurrent focus
51 830-53 572 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_945899955#P6989_RS07775The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1166955
Simplified PFAM architecture for HKOC_1166955
PFAM domain coverage: 183 / 580 aa (31.6%)
1 aa580 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[374-448] | HATPase_c[468-575]
- Domain count: 2
- Matched identifier: HKOC_1166955
- Positioned domains: His_kinase 374-448 ; HATPase_c 468-575
Cluster members and taxonomy
Representative gene: GCF_945899955#P6989_RS07775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_945899955
AssemblyERR1606358_bin.7_metaWRAP_v1.3_MAG · Contighaploid
Genome composition4 891 304 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 146 · HK 73 · RR 68CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key