1 Response_reg#1
1-60 aa · 60 aa · 13.0% of protein
Raw token
Response_reg:1:0.0000000000212:60:60:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS01705
Response regulator, unclassified
Eisenbergiella porci · GCF_009696275
ClassRRTypeunclassifiedLength462 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS01705Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage136 / 462 aa (29.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
370-410 aa · 41 aa · 8.9% of protein
Raw token
HTH_AraC:370:0.0000000388:410:41:423 HTH_AraC#3
425-459 aa · 35 aa · 7.6% of protein
Raw token
HTH_AraC:425:0.00000053:459:35:42- Raw architecture: Response_reg:1:0.0000000000212:60:60:111#HTH_AraC:370:0.0000000388:410:41:42#HTH_AraC:425:0.00000053:459:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000002.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span123281-124669Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_01680RefSeq proteinWP_235930497.1
Context group ID
GCF_009696275::NZ_VUMI01000002.1::G00028Context members
FYJ45_RS01705
Partner locus tags
FYJ45_RS01705
Partner old locus tags
FYJ45_01680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235930497.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS01705Primary locus identifier stored in the genes table.
Old locus tagFYJ45_01680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000002.1Sequence record reported by the local genomic context database.
Genomic interval123 281-124 669 nt1 389 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 281-124 669 ntGCF_009696275::NZ_VUMI01000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span123 281-124 669 nt1 389 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 281 nt124 669 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS01705GCF_009696275#FYJ45_RS01705
RRunclassifiedCurrent focus
123 281-124 669 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_945899955#P6989_RS01795Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127196
Simplified PFAM architecture for RROC_0127196
PFAM domain coverage: 318 / 520 aa (61.2%)
1 aa520 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-117] | GGDEF_2[157-282] | HTH_18[441-519]
- Domain count: 3
- Matched identifier: RROC_0127196
- Positioned domains: Response_reg 5-117 ; GGDEF_2 157-282 ; HTH_18 441-519
Cluster members and taxonomy
Representative gene: GCF_945899955#P6989_RS01795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key