1 dCache_1#1
48-257 aa · 210 aa · 36.5% of protein
Raw token
dCache_1:48:0.0000133:257:229:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS02095
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength575 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS02095Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length575 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage464 / 575 aa (80.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa575 aa
Domain-by-domain annotation4 items
2 HAMP#2
278-344 aa · 67 aa · 11.7% of protein
Raw token
HAMP:278:0.0000114:344:67:693 His_kinase#3
366-443 aa · 78 aa · 13.6% of protein
Raw token
His_kinase:366:9.58e-27:443:79:804 HATPase_c#4
463-571 aa · 109 aa · 19.0% of protein
Raw token
HATPase_c:463:0.0000000000000106:571:109:109- Raw architecture: dCache_1:48:0.0000133:257:229:195#HAMP:278:0.0000114:344:67:69#His_kinase:366:9.58e-27:443:79:80#HATPase_c:463:0.0000000000000106:571:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span210622-213104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_02070RefSeq proteinWP_154463226.1
Context group ID
GCF_009696275::NZ_VUMI01000002.1::G00029Context members
FYJ45_RS02095FYJ45_RS02100
Partner locus tags
FYJ45_RS02095FYJ45_RS02100
Partner old locus tags
FYJ45_02070FYJ45_02075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463226.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WBQ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WBQ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS02095Primary locus identifier stored in the genes table.
Old locus tagFYJ45_02070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000002.1Sequence record reported by the local genomic context database.
Genomic interval210 622-212 349 nt1 728 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span210 622-213 104 ntGCF_009696275::NZ_VUMI01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span210 622-213 104 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
210 622 nt213 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS02095GCF_009696275#FYJ45_RS02095
HKClassicCurrent focus
210 622-212 349 nt · Forward (+)
FYJ45_RS02100GCF_009696275#FYJ45_RS02100
RRunclassified
212 352-213 104 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS02095The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1189603
Simplified PFAM architecture for HKOC_1189603
PFAM domain coverage: 187 / 575 aa (32.5%)
1 aa575 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-442] | HATPase_c[462-572]
- Domain count: 2
- Matched identifier: HKOC_1189603
- Positioned domains: His_kinase 367-442 ; HATPase_c 462-572
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS02095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key