1 HisKA#1
111-171 aa · 61 aa · 18.5% of protein
Raw token
HisKA:111:0.0000000000000229:171:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS00540
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength330 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS00540Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length330 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 330 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa330 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
222-314 aa · 93 aa · 28.2% of protein
Raw token
HATPase_c:222:1.87e-18:314:94:109- Raw architecture: HisKA:111:0.0000000000000229:171:61:64#HATPase_c:222:1.87e-18:314:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span104949-105941Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_00545RefSeq proteinWP_235930460.1
Context group ID
GCF_009696275::NZ_VUMI01000001.1::G00002Context members
FYJ45_RS00540
Partner locus tags
FYJ45_RS00540
Partner old locus tags
FYJ45_00545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235930460.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS00540Primary locus identifier stored in the genes table.
Old locus tagFYJ45_00545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000001.1Sequence record reported by the local genomic context database.
Genomic interval104 949-105 941 nt993 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 949-105 941 ntGCF_009696275::NZ_VUMI01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span104 949-105 941 nt993 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 949 nt105 941 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS00540GCF_009696275#FYJ45_RS00540
HKClassicCurrent focus
104 949-105 941 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS00540The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2857131
Simplified PFAM architecture for HKOC_2857131
PFAM domain coverage: 152 / 330 aa (46.1%)
1 aa330 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[112-172] | HATPase_c[223-313]
- Domain count: 2
- Matched identifier: HKOC_2857131
- Positioned domains: HisKA 112-172 ; HATPase_c 223-313
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS00540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key