1 HisKA#1
286-352 aa · 67 aa · 10.1% of protein
Raw token
HisKA:286:7.89e-16:352:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS07245
Histidine kinase, Hybrid
Eisenbergiella porci · GCF_009696275
ClassHKTypeHybridLength664 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS07245Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length664 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 664 aa (45.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa664 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
399-516 aa · 118 aa · 17.8% of protein
Raw token
HATPase_c:399:9.14e-29:516:118:1093 Response_reg#3
540-657 aa · 118 aa · 17.8% of protein
Raw token
Response_reg:540:1.54e-28:657:118:111- Raw architecture: HisKA:286:7.89e-16:352:67:64#HATPase_c:399:9.14e-29:516:118:109#Response_reg:540:1.54e-28:657:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000008.1::G00088
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span139506-141500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_07215RefSeq proteinWP_195841712.1
Context group ID
GCF_009696275::NZ_VUMI01000008.1::G00088Context members
FYJ45_RS07245
Partner locus tags
FYJ45_RS07245
Partner old locus tags
FYJ45_07215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195841712.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS07245Primary locus identifier stored in the genes table.
Old locus tagFYJ45_07215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000008.1Sequence record reported by the local genomic context database.
Genomic interval139 506-141 500 nt1 995 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span139 506-141 500 ntGCF_009696275::NZ_VUMI01000008.1::G00088
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000008.1::G00088Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span139 506-141 500 nt1 995 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 506 nt141 500 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS07245GCF_009696275#FYJ45_RS07245
HKHybridCurrent focus
139 506-141 500 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS07245The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0861498
Simplified PFAM architecture for HKOC_0861498
PFAM domain coverage: 301 / 664 aa (45.3%)
1 aa664 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[286-352] | HATPase_c[399-516] | Response_reg[540-655]
- Domain count: 3
- Matched identifier: HKOC_0861498
- Positioned domains: HisKA 286-352 ; HATPase_c 399-516 ; Response_reg 540-655
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS07245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key