1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:1.73e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS04385
Response regulator OmpR family
Eisenbergiella porci · GCF_009696275
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_009696275#FYJ45_RS04385Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 225 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-217 aa · 70 aa · 31.1% of protein
Raw token
Trans_reg_C:148:1.32e-27:217:75:77- Raw architecture: Response_reg:4:1.73e-25:113:111:111#Trans_reg_C:148:1.32e-27:217:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_009696275::NZ_VUMI01000005.1::G00066
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span53190-58598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_04355RefSeq proteinWP_154463643.1
Context group ID
GCF_009696275::NZ_VUMI01000005.1::G00066Context members
FYJ45_RS04380FYJ45_RS04385FYJ45_RS04390FYJ45_RS04395
Partner locus tags
FYJ45_RS04380FYJ45_RS04385FYJ45_RS04390FYJ45_RS04395
Partner old locus tags
FYJ45_04350FYJ45_04355FYJ45_04360FYJ45_04365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463643.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VX37Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VX37_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS04385Primary locus identifier stored in the genes table.
Old locus tagFYJ45_04355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000005.1Sequence record reported by the local genomic context database.
Genomic interval54 305-54 982 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 190-58 598 ntGCF_009696275::NZ_VUMI01000005.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000005.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span53 190-58 598 nt5 409 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 190 nt58 598 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
FYJ45_RS04380GCF_009696275#FYJ45_RS04380
HKClassic
53 190-54 335 nt · Reverse (-)
FYJ45_RS04385GCF_009696275#FYJ45_RS04385
RROmpRCurrent focus
54 305-54 982 nt · Reverse (-)
FYJ45_RS04390GCF_009696275#FYJ45_RS04390
HKClassic
55 058-57 910 nt · Reverse (-)
FYJ45_RS04395GCF_009696275#FYJ45_RS04395
RROmpR
57 885-58 598 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS04385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1485953
Simplified PFAM architecture for RROC_1485953
PFAM domain coverage: 179 / 225 aa (79.6%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-216]
- Domain count: 2
- Matched identifier: RROC_1485953
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-216 ; Trans_reg_C 147-216
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS04385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key