1 HisKA#1
4-62 aa · 59 aa · 26.8% of protein
Raw token
HisKA:4:0.00000000445:62:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0K78_RS03325
Histidine kinase, Classic
Agathobacter sp. · GCF_036310465
ClassHKTypeClassicLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036310465#U0K78_RS03325Stable P2CS identifier used across views.
GenomeGCF_036310465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 220 aa (75.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
110-217 aa · 108 aa · 49.1% of protein
Raw token
HATPase_c:110:6.48e-24:217:109:109- Raw architecture: HisKA:4:0.00000000445:62:59:64#HATPase_c:110:6.48e-24:217:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036310465::NZ_JAXJRU010000057.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4639-5301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0K78_03320RefSeq proteinWP_330021708.1
Context group ID
GCF_036310465::NZ_JAXJRU010000057.1::G00006Context members
U0K78_RS03325
Partner locus tags
U0K78_RS03325
Partner old locus tags
U0K78_03320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330021708.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0K78_RS03325Primary locus identifier stored in the genes table.
Old locus tagU0K78_03320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXJRU010000057.1Sequence record reported by the local genomic context database.
Genomic interval4 639-5 301 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 639-5 301 ntGCF_036310465::NZ_JAXJRU010000057.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036310465::NZ_JAXJRU010000057.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXJRU010000057.1All displayed genes belong to this local TCS context.
Neighborhood span4 639-5 301 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 639 nt5 301 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0K78_RS03325GCF_036310465#U0K78_RS03325
HKClassicCurrent focus
4 639-5 301 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036310465#U0K78_RS03325The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2928748
Simplified PFAM architecture for HKOC_2928748
PFAM domain coverage: 167 / 220 aa (75.9%)
1 aa220 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[3-61] | HATPase_c[110-217]
- Domain count: 2
- Matched identifier: HKOC_2928748
- Positioned domains: HisKA 3-61 ; HATPase_c 110-217
Cluster members and taxonomy
Representative gene: GCF_036310465#U0K78_RS03325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_036310465
AssemblyASM3631046v1 · Contighaploid
Genome composition2 599 641 bp · 42,0% GCAgathobacter sp.
Signal transduction countsGenes 65 · HK 30 · RR 34CheA 2 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key