1 Response_reg#1
5-113 aa · 109 aa · 30.9% of protein
Raw token
Response_reg:5:1.32e-25:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0K78_RS03065
Response regulator, CheB family
Agathobacter sp. · GCF_036310465
ClassRRTypeCheBLength353 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036310465#U0K78_RS03065Stable P2CS identifier used across views.
GenomeGCF_036310465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length353 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage290 / 353 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa353 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
166-346 aa · 181 aa · 51.3% of protein
Raw token
CheB_methylest:166:8.72e-81:346:181:177- Raw architecture: Response_reg:5:1.32e-25:113:110:111#CheB_methylest:166:8.72e-81:346:181:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036310465::NZ_JAXJRU010000054.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54288-57462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0K78_03060RefSeq proteinWP_308655760.1
Context group ID
GCF_036310465::NZ_JAXJRU010000054.1::G00005Context members
U0K78_RS03060U0K78_RS03065
Partner locus tags
U0K78_RS03060U0K78_RS03065
Partner old locus tags
U0K78_03055U0K78_03060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308655760.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0K78_RS03065Primary locus identifier stored in the genes table.
Old locus tagU0K78_03060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXJRU010000054.1Sequence record reported by the local genomic context database.
Genomic interval56 401-57 462 nt1 062 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 288-57 462 ntGCF_036310465::NZ_JAXJRU010000054.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036310465::NZ_JAXJRU010000054.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXJRU010000054.1All displayed genes belong to this local TCS context.
Neighborhood span54 288-57 462 nt3 175 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 288 nt57 462 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0K78_RS03060GCF_036310465#U0K78_RS03060
HKCheA
54 288-56 399 nt · Reverse (-)
U0K78_RS03065GCF_036310465#U0K78_RS03065
RRCheBCurrent focus
56 401-57 462 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036310465#U0K78_RS03065The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0474822
Simplified PFAM architecture for RROC_0474822
PFAM domain coverage: 288 / 353 aa (81.6%)
1 aa353 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[5-111] | CheB_methylest[166-346]
- Domain count: 2
- Matched identifier: RROC_0474822
- Positioned domains: Response_reg 5-111 ; CheB_methylest 166-346
Cluster members and taxonomy
Representative gene: GCF_036310465#U0K78_RS03065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_036310465
AssemblyASM3631046v1 · Contighaploid
Genome composition2 599 641 bp · 42,0% GCAgathobacter sp.
Signal transduction countsGenes 65 · HK 30 · RR 34CheA 2 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key