1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.36e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0K78_RS01770
Response regulator OmpR family
Agathobacter sp. · GCF_036310465
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036310465#U0K78_RS01770Stable P2CS identifier used across views.
GenomeGCF_036310465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:143:3.62e-27:215:77:77- Raw architecture: Response_reg:4:1.36e-32:112:111:111#Trans_reg_C:143:3.62e-27:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036310465::NZ_JAXJRU010000035.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2266-4535Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0K78_01765RefSeq proteinWP_330021472.1
Context group ID
GCF_036310465::NZ_JAXJRU010000035.1::G00003Context members
U0K78_RS01770U0K78_RS01775
Partner locus tags
U0K78_RS01770U0K78_RS01775
Partner old locus tags
U0K78_01765U0K78_01770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330021472.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0K78_RS01770Primary locus identifier stored in the genes table.
Old locus tagU0K78_01765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXJRU010000035.1Sequence record reported by the local genomic context database.
Genomic interval2 266-2 937 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 266-4 535 ntGCF_036310465::NZ_JAXJRU010000035.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036310465::NZ_JAXJRU010000035.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXJRU010000035.1All displayed genes belong to this local TCS context.
Neighborhood span2 266-4 535 nt2 270 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 266 nt4 535 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0K78_RS01770GCF_036310465#U0K78_RS01770
RROmpRCurrent focus
2 266-2 937 nt · Forward (+)
U0K78_RS01775GCF_036310465#U0K78_RS01775
HKClassic
2 973-4 535 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036310465#U0K78_RS01770The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1621496
Simplified PFAM architecture for RROC_1621496
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[143-215]
- Domain count: 2
- Matched identifier: RROC_1621496
- Positioned domains: Response_reg 4-111 ; Trans_reg_C 143-215
Cluster members and taxonomy
Representative gene: GCF_036310465#U0K78_RS01770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_036310465
AssemblyASM3631046v1 · Contighaploid
Genome composition2 599 641 bp · 42,0% GCAgathobacter sp.
Signal transduction countsGenes 65 · HK 30 · RR 34CheA 2 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key