1 Hpt#1
5-98 aa · 94 aa · 13.4% of protein
Raw token
Hpt:5:1.12e-17:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0K78_RS03060
Histidine kinase, CheA
Agathobacter sp. · GCF_036310465
ClassHKTypeCheALength703 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036310465#U0K78_RS03060Stable P2CS identifier used across views.
GenomeGCF_036310465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length703 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 703 aa (60.6%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa703 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
321-384 aa · 64 aa · 9.1% of protein
Raw token
H-kinase_dim:321:0.00000000000000154:384:67:673 HATPase_c#3
432-571 aa · 140 aa · 19.9% of protein
Raw token
HATPase_c:432:0.0000000000000016:571:140:1094 CheW#4
576-703 aa · 128 aa · 18.2% of protein
Raw token
CheW:576:5.45e-30:703:135:138- Raw architecture: Hpt:5:1.12e-17:98:94:84#H-kinase_dim:321:0.00000000000000154:384:67:67#HATPase_c:432:0.0000000000000016:571:140:109#CheW:576:5.45e-30:703:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036310465::NZ_JAXJRU010000054.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54288-57462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0K78_03055RefSeq proteinWP_330021663.1
Context group ID
GCF_036310465::NZ_JAXJRU010000054.1::G00005Context members
U0K78_RS03060U0K78_RS03065
Partner locus tags
U0K78_RS03060U0K78_RS03065
Partner old locus tags
U0K78_03055U0K78_03060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330021663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0K78_RS03060Primary locus identifier stored in the genes table.
Old locus tagU0K78_03055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXJRU010000054.1Sequence record reported by the local genomic context database.
Genomic interval54 288-56 399 nt2 112 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 288-57 462 ntGCF_036310465::NZ_JAXJRU010000054.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036310465::NZ_JAXJRU010000054.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXJRU010000054.1All displayed genes belong to this local TCS context.
Neighborhood span54 288-57 462 nt3 175 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 288 nt57 462 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0K78_RS03060GCF_036310465#U0K78_RS03060
HKCheACurrent focus
54 288-56 399 nt · Reverse (-)
U0K78_RS03065GCF_036310465#U0K78_RS03065
RRCheB
56 401-57 462 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036310465#U0K78_RS03060The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0764532
Simplified PFAM architecture for HKOC_0764532
PFAM domain coverage: 501 / 703 aa (71.3%)
1 aa703 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-97] | P2[184-260] | H-kinase_dim[320-384] | HATPase_c[433-571] | CheW[576-702]
- Domain count: 5
- Matched identifier: HKOC_0764532
- Positioned domains: Hpt 5-97 ; P2 184-260 ; H-kinase_dim 320-384 ; HATPase_c 433-571 ; CheW 576-702
Cluster members and taxonomy
Representative gene: GCF_036310465#U0K78_RS03060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_036310465
AssemblyASM3631046v1 · Contighaploid
Genome composition2 599 641 bp · 42,0% GCAgathobacter sp.
Signal transduction countsGenes 65 · HK 30 · RR 34CheA 2 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key