1 Response_reg#1
4-113 aa · 110 aa · 50.5% of protein
Raw token
Response_reg:4:8.01e-21:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0K78_RS02615
Response regulator OmpR family
Agathobacter sp. · GCF_036310465
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036310465#U0K78_RS02615Stable P2CS identifier used across views.
GenomeGCF_036310465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 218 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-214 aa · 70 aa · 32.1% of protein
Raw token
Trans_reg_C:145:3.17e-24:214:76:77- Raw architecture: Response_reg:4:8.01e-21:113:112:111#Trans_reg_C:145:3.17e-24:214:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036310465::NZ_JAXJRU010000049.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8265-10312Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0K78_02610RefSeq proteinWP_330021599.1
Context group ID
GCF_036310465::NZ_JAXJRU010000049.1::G00004Context members
U0K78_RS02615U0K78_RS02620
Partner locus tags
U0K78_RS02615U0K78_RS02620
Partner old locus tags
U0K78_02610U0K78_02615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330021599.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0K78_RS02615Primary locus identifier stored in the genes table.
Old locus tagU0K78_02610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXJRU010000049.1Sequence record reported by the local genomic context database.
Genomic interval8 265-8 921 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 265-10 312 ntGCF_036310465::NZ_JAXJRU010000049.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036310465::NZ_JAXJRU010000049.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXJRU010000049.1All displayed genes belong to this local TCS context.
Neighborhood span8 265-10 312 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 265 nt10 312 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0K78_RS02615GCF_036310465#U0K78_RS02615
RROmpRCurrent focus
8 265-8 921 nt · Forward (+)
U0K78_RS02620GCF_036310465#U0K78_RS02620
HKClassic
8 918-10 312 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036310465#U0K78_RS02615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1834416
Simplified PFAM architecture for RROC_1834416
PFAM domain coverage: 179 / 218 aa (82.1%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-214]
- Domain count: 2
- Matched identifier: RROC_1834416
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-214
Cluster members and taxonomy
Representative gene: GCF_036310465#U0K78_RS02615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_036310465
AssemblyASM3631046v1 · Contighaploid
Genome composition2 599 641 bp · 42,0% GCAgathobacter sp.
Signal transduction countsGenes 65 · HK 30 · RR 34CheA 2 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key