1 Response_reg#1
10-118 aa · 109 aa · 46.0% of protein
Raw token
Response_reg:10:3.64e-33:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0K78_RS00175
Response regulator OmpR family
Agathobacter sp. · GCF_036310465
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036310465#U0K78_RS00175Stable P2CS identifier used across views.
GenomeGCF_036310465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 237 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-235 aa · 74 aa · 31.2% of protein
Raw token
Trans_reg_C:162:7.38e-19:235:75:77- Raw architecture: Response_reg:10:3.64e-33:118:111:111#Trans_reg_C:162:7.38e-19:235:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036310465::NZ_JAXJRU010000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7767-9660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0K78_00175RefSeq proteinWP_308656313.1
Context group ID
GCF_036310465::NZ_JAXJRU010000004.1::G00001Context members
U0K78_RS00175U0K78_RS00180
Partner locus tags
U0K78_RS00175U0K78_RS00180
Partner old locus tags
U0K78_00175U0K78_00180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308656313.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0K78_RS00175Primary locus identifier stored in the genes table.
Old locus tagU0K78_00175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXJRU010000004.1Sequence record reported by the local genomic context database.
Genomic interval7 767-8 480 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 767-9 660 ntGCF_036310465::NZ_JAXJRU010000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036310465::NZ_JAXJRU010000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXJRU010000004.1All displayed genes belong to this local TCS context.
Neighborhood span7 767-9 660 nt1 894 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 767 nt9 660 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0K78_RS00175GCF_036310465#U0K78_RS00175
RROmpRCurrent focus
7 767-8 480 nt · Forward (+)
U0K78_RS00180GCF_036310465#U0K78_RS00180
HKClassic
8 470-9 660 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036310465#U0K78_RS00175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0980350
Simplified PFAM architecture for RROC_0980350
PFAM domain coverage: 183 / 237 aa (77.2%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-118] | Trans_reg_C[162-235]
- Domain count: 2
- Matched identifier: RROC_0980350
- Positioned domains: Response_reg 10-118 ; Trans_reg_C 162-235
Cluster members and taxonomy
Representative gene: GCF_036310465#U0K78_RS00175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_036310465
AssemblyASM3631046v1 · Contighaploid
Genome composition2 599 641 bp · 42,0% GCAgathobacter sp.
Signal transduction countsGenes 65 · HK 30 · RR 34CheA 2 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key