1 GGDEF#1
140-284 aa · 145 aa · 22.4% of protein
Raw token
GGDEF:140:2.18e-31:284:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0K78_RS00590
Response regulator, RpfG family
Agathobacter sp. · GCF_036310465
ClassRRTypeRpfGLength647 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036310465#U0K78_RS00590Stable P2CS identifier used across views.
GenomeGCF_036310465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length647 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage358 / 647 aa (55.3%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa647 aa
Domain-by-domain annotation3 items
2 Response_reg#2
307-412 aa · 106 aa · 16.4% of protein
Raw token
Response_reg:307:2.62e-24:412:107:1113 HD#3
494-600 aa · 107 aa · 16.5% of protein
Raw token
HD:494:0.00000000000000455:600:107:110- Raw architecture: GGDEF:140:2.18e-31:284:156:160#Response_reg:307:2.62e-24:412:107:111#HD:494:0.00000000000000455:600:107:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036310465::NZ_JAXJRU010000009.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24073-26016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0K78_00590RefSeq proteinWP_330021308.1
Context group ID
GCF_036310465::NZ_JAXJRU010000009.1::G00002Context members
U0K78_RS00590
Partner locus tags
U0K78_RS00590
Partner old locus tags
U0K78_00590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330021308.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0K78_RS00590Primary locus identifier stored in the genes table.
Old locus tagU0K78_00590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXJRU010000009.1Sequence record reported by the local genomic context database.
Genomic interval24 073-26 016 nt1 944 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 073-26 016 ntGCF_036310465::NZ_JAXJRU010000009.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036310465::NZ_JAXJRU010000009.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXJRU010000009.1All displayed genes belong to this local TCS context.
Neighborhood span24 073-26 016 nt1 944 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 073 nt26 016 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0K78_RS00590GCF_036310465#U0K78_RS00590
RRRpfGCurrent focus
24 073-26 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036310465#U0K78_RS00590The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0036601
Simplified PFAM architecture for RROC_0036601
PFAM domain coverage: 378 / 647 aa (58.4%)
1 aa647 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[140-284] | Response_reg[307-418] | HD_5[500-620]
- Domain count: 3
- Matched identifier: RROC_0036601
- Positioned domains: GGDEF 140-284 ; Response_reg 307-418 ; HD_5 500-620
Cluster members and taxonomy
Representative gene: GCF_036310465#U0K78_RS00590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_036310465
AssemblyASM3631046v1 · Contighaploid
Genome composition2 599 641 bp · 42,0% GCAgathobacter sp.
Signal transduction countsGenes 65 · HK 30 · RR 34CheA 2 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key