1 HAMP#1
287-359 aa · 73 aa · 12.6% of protein
Raw token
HAMP:287:0.000000000667:359:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS09095
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS09095Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 580 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
374-453 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:374:7.4e-28:453:80:803 HATPase_c#3
471-577 aa · 107 aa · 18.4% of protein
Raw token
HATPase_c:471:0.000000843:577:109:109- Raw architecture: HAMP:287:0.000000000667:359:73:69#His_kinase:374:7.4e-28:453:80:80#HATPase_c:471:0.000000843:577:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000012.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4902-6644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_09070RefSeq proteinWP_154464351.1
Context group ID
GCF_009696275::NZ_VUMI01000012.1::G00011Context members
FYJ45_RS09095
Partner locus tags
FYJ45_RS09095
Partner old locus tags
FYJ45_09070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464351.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WG27Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WG27_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS09095Primary locus identifier stored in the genes table.
Old locus tagFYJ45_09070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000012.1Sequence record reported by the local genomic context database.
Genomic interval4 902-6 644 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 902-6 644 ntGCF_009696275::NZ_VUMI01000012.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000012.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000012.1All displayed genes belong to this local TCS context.
Neighborhood span4 902-6 644 nt1 743 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 902 nt6 644 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS09095GCF_009696275#FYJ45_RS09095
HKClassicCurrent focus
4 902-6 644 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS09095The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1163778
Simplified PFAM architecture for HKOC_1163778
PFAM domain coverage: 128 / 580 aa (22.1%)
1 aa580 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[312-359] | His_kinase[374-453]
- Domain count: 2
- Matched identifier: HKOC_1163778
- Positioned domains: HAMP 312-359 ; His_kinase 374-453
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS09095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key