1 HAMP#1
152-219 aa · 68 aa · 15.1% of protein
Raw token
HAMP:152:0.00000717:219:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS08920
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS08920Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 449 aa (53.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-295 aa · 66 aa · 14.7% of protein
Raw token
HisKA:230:0.0000000237:295:66:643 HATPase_c#3
343-447 aa · 105 aa · 23.4% of protein
Raw token
HATPase_c:343:8.52e-17:447:105:109- Raw architecture: HAMP:152:0.00000717:219:70:69#HisKA:230:0.0000000237:295:66:64#HATPase_c:343:8.52e-17:447:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000011.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98398-100397Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_08895RefSeq proteinWP_154464326.1
Context group ID
GCF_009696275::NZ_VUMI01000011.1::G00010Context members
FYJ45_RS08920FYJ45_RS08925
Partner locus tags
FYJ45_RS08920FYJ45_RS08925
Partner old locus tags
FYJ45_08895FYJ45_08900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464326.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VZG2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VZG2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS08920Primary locus identifier stored in the genes table.
Old locus tagFYJ45_08895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000011.1Sequence record reported by the local genomic context database.
Genomic interval98 398-99 747 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 398-100 397 ntGCF_009696275::NZ_VUMI01000011.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000011.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000011.1All displayed genes belong to this local TCS context.
Neighborhood span98 398-100 397 nt2 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 398 nt100 397 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS08920GCF_009696275#FYJ45_RS08920
HKClassicCurrent focus
98 398-99 747 nt · Reverse (-)
FYJ45_RS08925GCF_009696275#FYJ45_RS08925
RROmpR
99 726-100 397 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS08920The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1978350
Simplified PFAM architecture for HKOC_1978350
PFAM domain coverage: 163 / 449 aa (36.3%)
1 aa449 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-292] | HATPase_c[343-446]
- Domain count: 2
- Matched identifier: HKOC_1978350
- Positioned domains: HisKA 234-292 ; HATPase_c 343-446
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS08920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key