1 dCache_1#1
192-300 aa · 109 aa · 17.3% of protein
Raw token
dCache_1:192:0.000000147:300:112:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS08385
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength629 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS08385Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length629 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 629 aa (58.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa629 aa
Domain-by-domain annotation4 items
2 HAMP#2
316-388 aa · 73 aa · 11.6% of protein
Raw token
HAMP:316:0.0000000238:388:73:693 His_kinase#3
412-486 aa · 75 aa · 11.9% of protein
Raw token
His_kinase:412:5.33e-25:486:75:804 HATPase_c#4
508-618 aa · 111 aa · 17.6% of protein
Raw token
HATPase_c:508:0.0000484:618:111:109- Raw architecture: dCache_1:192:0.000000147:300:112:195#HAMP:316:0.0000000238:388:73:69#His_kinase:412:5.33e-25:486:75:80#HATPase_c:508:0.0000484:618:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000010.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span102993-104882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_08365RefSeq proteinWP_154464235.1
Context group ID
GCF_009696275::NZ_VUMI01000010.1::G00007Context members
FYJ45_RS08385
Partner locus tags
FYJ45_RS08385
Partner old locus tags
FYJ45_08365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464235.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WF41Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WF41_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS08385Primary locus identifier stored in the genes table.
Old locus tagFYJ45_08365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000010.1Sequence record reported by the local genomic context database.
Genomic interval102 993-104 882 nt1 890 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span102 993-104 882 ntGCF_009696275::NZ_VUMI01000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000010.1All displayed genes belong to this local TCS context.
Neighborhood span102 993-104 882 nt1 890 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 993 nt104 882 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS08385GCF_009696275#FYJ45_RS08385
HKClassicCurrent focus
102 993-104 882 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS08385The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0951418
Simplified PFAM architecture for HKOC_0951418
PFAM domain coverage: 76 / 629 aa (12.1%)
1 aa629 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[412-487]
- Domain count: 1
- Matched identifier: HKOC_0951418
- Positioned domains: His_kinase 412-487
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS08385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key