1 Response_reg#1
4-112 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:4:4.29e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS07685
Response regulator OmpR family
Eisenbergiella porci · GCF_009696275
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS07685Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 224 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:145:1.85e-22:218:76:77- Raw architecture: Response_reg:4:4.29e-31:112:111:111#Trans_reg_C:145:1.85e-22:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000009.1::G00092
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86772-88762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_07650RefSeq proteinWP_154464132.1
Context group ID
GCF_009696275::NZ_VUMI01000009.1::G00092Context members
FYJ45_RS07680FYJ45_RS07685
Partner locus tags
FYJ45_RS07680FYJ45_RS07685
Partner old locus tags
FYJ45_07645FYJ45_07650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464132.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WEQ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WEQ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS07685Primary locus identifier stored in the genes table.
Old locus tagFYJ45_07650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000009.1Sequence record reported by the local genomic context database.
Genomic interval88 088-88 762 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 772-88 762 ntGCF_009696275::NZ_VUMI01000009.1::G00092
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000009.1::G00092Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000009.1All displayed genes belong to this local TCS context.
Neighborhood span86 772-88 762 nt1 991 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 772 nt88 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS07680GCF_009696275#FYJ45_RS07680
HKClassic
86 772-88 112 nt · Reverse (-)
FYJ45_RS07685GCF_009696275#FYJ45_RS07685
RROmpRCurrent focus
88 088-88 762 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS07685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1548590
Simplified PFAM architecture for RROC_1548590
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1548590
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS07685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key