1 HisKA#1
242-306 aa · 65 aa · 12.7% of protein
Raw token
HisKA:242:0.000000000000219:306:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS06935
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS06935Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 510 aa (37.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
356-479 aa · 124 aa · 24.3% of protein
Raw token
HATPase_c:356:0.000000000000678:479:127:109- Raw architecture: HisKA:242:0.000000000000219:306:65:64#HATPase_c:356:0.000000000000678:479:127:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000008.1::G00085
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67934-70220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_06905RefSeq proteinWP_154464017.1
Context group ID
GCF_009696275::NZ_VUMI01000008.1::G00085Context members
FYJ45_RS06935FYJ45_RS06940
Partner locus tags
FYJ45_RS06935FYJ45_RS06940
Partner old locus tags
FYJ45_06905FYJ45_06910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464017.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WF39Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WF39_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS06935Primary locus identifier stored in the genes table.
Old locus tagFYJ45_06905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000008.1Sequence record reported by the local genomic context database.
Genomic interval67 934-69 466 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 934-70 220 ntGCF_009696275::NZ_VUMI01000008.1::G00085
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000008.1::G00085Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span67 934-70 220 nt2 287 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 934 nt70 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS06935GCF_009696275#FYJ45_RS06935
HKClassicCurrent focus
67 934-69 466 nt · Reverse (-)
FYJ45_RS06940GCF_009696275#FYJ45_RS06940
RROmpR
69 450-70 220 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS06935The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1429626
Simplified PFAM architecture for HKOC_1429626
PFAM domain coverage: 190 / 510 aa (37.3%)
1 aa510 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-307] | HATPase_c[356-479]
- Domain count: 2
- Matched identifier: HKOC_1429626
- Positioned domains: HisKA 242-307 ; HATPase_c 356-479
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS06935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key