1 PAS_3#1
62-144 aa · 83 aa · 6.2% of protein
Raw token
PAS_3:62:0.000000000901:144:83:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS06685
Histidine kinase, Hybrid
Eisenbergiella porci · GCF_009696275
ClassHKTypeHybridLength1330 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS06685Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1330 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage512 / 1330 aa (38.5%)Merged over positioned domains only.
Domain description3 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1330 aa
Domain-by-domain annotation6 items
2 PAS_3#2
185-258 aa · 74 aa · 5.6% of protein
Raw token
PAS_3:185:0.000000000000166:258:74:893 PAS_3#3
455-513 aa · 59 aa · 4.4% of protein
Raw token
PAS_3:455:0.00000295:513:61:894 HisKA#4
941-1006 aa · 66 aa · 5.0% of protein
Raw token
HisKA:941:2.43e-17:1006:66:645 HATPase_c#5
1054-1167 aa · 114 aa · 8.6% of protein
Raw token
HATPase_c:1054:6.69e-32:1167:114:1096 Response_reg#6
1202-1317 aa · 116 aa · 8.7% of protein
Raw token
Response_reg:1202:1.07e-23:1317:116:111- Raw architecture: PAS_3:62:0.000000000901:144:83:89#PAS_3:185:0.000000000000166:258:74:89#PAS_3:455:0.00000295:513:61:89#HisKA:941:2.43e-17:1006:66:64#HATPase_c:1054:6.69e-32:1167:114:109#Response_reg:1202:1.07e-23:1317:116:111
- Domain description: 3 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000008.1::G00084
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10805-17405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_06660RefSeq proteinWP_235930661.1
Context group ID
GCF_009696275::NZ_VUMI01000008.1::G00084Context members
FYJ45_RS06685FYJ45_RS06690
Partner locus tags
FYJ45_RS06685FYJ45_RS06690
Partner old locus tags
FYJ45_06660FYJ45_06665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235930661.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS06685Primary locus identifier stored in the genes table.
Old locus tagFYJ45_06660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000008.1Sequence record reported by the local genomic context database.
Genomic interval10 805-14 797 nt3 993 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 805-17 405 ntGCF_009696275::NZ_VUMI01000008.1::G00084
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000008.1::G00084Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span10 805-17 405 nt6 601 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 805 nt17 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS06685GCF_009696275#FYJ45_RS06685
HKHybridCurrent focus
10 805-14 797 nt · Reverse (-)
FYJ45_RS06690GCF_009696275#FYJ45_RS06690
RRPleD_VieA
14 814-17 405 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_945899955#P6989_RS01115Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0090621
Simplified PFAM architecture for HKOC_0090621
PFAM domain coverage: 533 / 1356 aa (39.3%)
1 aa1356 aa
PAS_3PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[88-169] | PAS_3[212-284] | PAS_3[454-536] | HisKA[967-1032] | HATPase_c[1080-1193] | Response_reg[1228-1342]
- Domain count: 6
- Matched identifier: HKOC_0090621
- Positioned domains: PAS_3 88-169 ; PAS_3 212-284 ; PAS_3 454-536 ; HisKA 967-1032 ; HATPase_c 1080-1193 ; Response_reg 1228-1342
Cluster members and taxonomy
Representative gene: GCF_945899955#P6989_RS01115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key