1 HisKA#1
148-216 aa · 69 aa · 18.2% of protein
Raw token
HisKA:148:0.0000000000000443:216:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS06645
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength379 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS06645Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length379 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 379 aa (47.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa379 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-371 aa · 112 aa · 29.6% of protein
Raw token
HATPase_c:260:2.09e-30:371:112:109- Raw architecture: HisKA:148:0.0000000000000443:216:69:64#HATPase_c:260:2.09e-30:371:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000008.1::G00083
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2527-4370Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_06620RefSeq proteinWP_021637642.1
Context group ID
GCF_009696275::NZ_VUMI01000008.1::G00083Context members
FYJ45_RS06640FYJ45_RS06645
Partner locus tags
FYJ45_RS06640FYJ45_RS06645
Partner old locus tags
FYJ45_06615FYJ45_06620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021637642.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS06645Primary locus identifier stored in the genes table.
Old locus tagFYJ45_06620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000008.1Sequence record reported by the local genomic context database.
Genomic interval3 231-4 370 nt1 140 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 527-4 370 ntGCF_009696275::NZ_VUMI01000008.1::G00083
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000008.1::G00083Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span2 527-4 370 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 527 nt4 370 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS06640GCF_009696275#FYJ45_RS06640
RROmpR
2 527-3 234 nt · Reverse (-)
FYJ45_RS06645GCF_009696275#FYJ45_RS06645
HKClassicCurrent focus
3 231-4 370 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS17150Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2619182
Simplified PFAM architecture for HKOC_2619182
PFAM domain coverage: 284 / 379 aa (74.9%)
1 aa379 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[21-124] | HisKA[148-216] | HATPase_c[261-371]
- Domain count: 3
- Matched identifier: HKOC_2619182
- Positioned domains: DUF4118 21-124 ; HisKA 148-216 ; HATPase_c 261-371
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS17150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key