1 Response_reg#1
11-120 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:11:3.94e-32:120:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS06640
Response regulator OmpR family
Eisenbergiella porci · GCF_009696275
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS06640Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:157:4.41e-29:233:77:77- Raw architecture: Response_reg:11:3.94e-32:120:111:111#Trans_reg_C:157:4.41e-29:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000008.1::G00083
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2527-4370Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_06615RefSeq proteinWP_154463978.1
Context group ID
GCF_009696275::NZ_VUMI01000008.1::G00083Context members
FYJ45_RS06640FYJ45_RS06645
Partner locus tags
FYJ45_RS06640FYJ45_RS06645
Partner old locus tags
FYJ45_06615FYJ45_06620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463978.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WES8Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WES8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS06640Primary locus identifier stored in the genes table.
Old locus tagFYJ45_06615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000008.1Sequence record reported by the local genomic context database.
Genomic interval2 527-3 234 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 527-4 370 ntGCF_009696275::NZ_VUMI01000008.1::G00083
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000008.1::G00083Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span2 527-4 370 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 527 nt4 370 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS06640GCF_009696275#FYJ45_RS06640
RROmpRCurrent focus
2 527-3 234 nt · Reverse (-)
FYJ45_RS06645GCF_009696275#FYJ45_RS06645
HKClassic
3 231-4 370 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS06640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1027188
Simplified PFAM architecture for RROC_1027188
PFAM domain coverage: 187 / 235 aa (79.6%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-120] | Trans_reg_C[157-233]
- Domain count: 2
- Matched identifier: RROC_1027188
- Positioned domains: Response_reg 11-120 ; Response_reg 11-120 ; Trans_reg_C 157-233 ; Trans_reg_C 157-233
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS06640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key