1 HAMP#1
480-531 aa · 52 aa · 5.5% of protein
Raw token
HAMP:480:0.0000164:531:52:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS04390
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength950 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_009696275#FYJ45_RS04390Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length950 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage205 / 950 aa (21.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa950 aa
Domain-by-domain annotation3 items
2 HisKA#2
563-628 aa · 66 aa · 6.9% of protein
Raw token
HisKA:563:2.59e-18:628:66:643 HATPase_c#3
681-767 aa · 87 aa · 9.2% of protein
Raw token
HATPase_c:681:0.000000000000341:767:91:109- Raw architecture: HAMP:480:0.0000164:531:52:69#HisKA:563:2.59e-18:628:66:64#HATPase_c:681:0.000000000000341:767:91:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_009696275::NZ_VUMI01000005.1::G00066
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span53190-58598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_04360RefSeq proteinWP_235930566.1
Context group ID
GCF_009696275::NZ_VUMI01000005.1::G00066Context members
FYJ45_RS04380FYJ45_RS04385FYJ45_RS04390FYJ45_RS04395
Partner locus tags
FYJ45_RS04380FYJ45_RS04385FYJ45_RS04390FYJ45_RS04395
Partner old locus tags
FYJ45_04350FYJ45_04355FYJ45_04360FYJ45_04365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235930566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS04390Primary locus identifier stored in the genes table.
Old locus tagFYJ45_04360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000005.1Sequence record reported by the local genomic context database.
Genomic interval55 058-57 910 nt2 853 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 190-58 598 ntGCF_009696275::NZ_VUMI01000005.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000005.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span53 190-58 598 nt5 409 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 190 nt58 598 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
FYJ45_RS04380GCF_009696275#FYJ45_RS04380
HKClassic
53 190-54 335 nt · Reverse (-)
FYJ45_RS04385GCF_009696275#FYJ45_RS04385
RROmpR
54 305-54 982 nt · Reverse (-)
FYJ45_RS04390GCF_009696275#FYJ45_RS04390
HKClassicCurrent focus
55 058-57 910 nt · Reverse (-)
FYJ45_RS04395GCF_009696275#FYJ45_RS04395
RROmpR
57 885-58 598 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS04390The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0327018
Simplified PFAM architecture for HKOC_0327018
PFAM domain coverage: 157 / 950 aa (16.5%)
1 aa950 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[563-627] | HATPase_c[676-767]
- Domain count: 2
- Matched identifier: HKOC_0327018
- Positioned domains: HisKA 563-627 ; HATPase_c 676-767
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS04390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key